Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79820 721 / 0 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT1G67300 641 / 0 Major facilitator superfamily protein (.1.2) AT5G16150 375 / 8e-125 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G05030 354 / 4e-117 Major facilitator superfamily protein (.1) AT1G75220 189 / 3e-54 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 184 / 2e-52 Major facilitator superfamily protein (.1) AT5G59250 181 / 1e-50 Major facilitator superfamily protein (.1) AT1G54730 178 / 2e-50 Major facilitator superfamily protein (.1.2.3) AT5G18840 172 / 4e-48 Major facilitator superfamily protein (.1) AT2G48020 171 / 1e-47 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083200 [exp] 693 / 0 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.004G097800 [exp] 378 / 1e-125 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.014G060800 [exp] 359 / 4e-119 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.017G116400 [exp] 296 / 4e-97 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.019G055600 [exp] 186 / 8e-53 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Potri.007G024300 [exp] 184 / 2e-52 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G027700 [exp] 177 / 1e-49 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.013G027500 [exp] 173 / 3e-48 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.014G136600 [exp] 171 / 9e-48 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034930 [exp] 566 / 0 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035862 [exp] 421 / 2e-146 AT1G79820 385 / 2e-133 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10025800 [exp] 369 / 4e-126 AT1G79820 357 / 2e-122 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10009158 [exp] 368 / 4e-122 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 368 / 7e-122 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033568 [exp] 358 / 4e-118 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 352 / 2e-115 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 340 / 1e-111 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 313 / 3e-101 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10029629 [exp] 185 / 1e-52 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G185300.1 pacid=42791283 polypeptide=Potri.001G185300.1.p locus=Potri.001G185300 ID=Potri.001G185300.1.v4.1 annot-version=v4.1 ATGAGAGGGCGTTATGTGGAGACAGTGGTGACCAAGAAACGGGCTTCGTCCAGGGATTTTATTAATGCCTATGATAGAGAAGAAAGTTCTGGACATTTAG CGATTGGAACAGCCAAAGATGCTGGAAACCCTCACTGGAGGCATTCTTTGGTTCATGTACTGGTAGCAACTCTTTCTTCATTCTTATTCGGCTATCATCT TGGAGTAGTTAATGAAACACTAGAAACCATCTCTTTTGACCTTGGCTTTAGTGGGAATACCATGGCTGAAGGTCTGGTGGTAAGTACATGCCTAGGGGGT GCATTTGTTGGATCTATATTCAGTGGCTGGATAGCGGATGGTGTTGGGCGCCGCAGGGCGTTCCAGCTTTGTGCTTTACCAATGATAATTGGGGCTTCAA TGAGTGCAACAACAAAAGATCTGTGGGGTATGCTTCTAGGGAGGTTTTTTGTTGGCACTGGGATGGGAATTGGCCCACCTGTTGCGGCTCTCTATGTGAC AGAGGTTTCACCAGCGTATGTAAGGGGTACTTATGGGAGTTTGACCCAAATTTCGACATGTCTTGGACTTTTGGGATCTTTCGTTATTGGAATTCCAGCC AAGGAAACTATGGGTTGGTGGCGCATTTGTTTTTGGGTGTCTGCCATCCCTGCTGCAATGCTTGCTCTTTTTATGGAGTTTTGTGCTGAGAGTCCTCACT GGCTTTTAAAGAGGGGAAGAAGTACTGAAGCTGAAGCCCAATTTGAGAAACTTTTAGGAGGATCACATGTCAAATCTGCAATTATCGAATTGTCAAAGTC AGACCGGGGAGATGAAGTTGATAAAGTGAAGTTATCAGAGTTTCTCTATGGTCGCTATTTTAAAGTGGTTTTCATTGGGTCTGCCCTTTTTGCCTTGCAA CAGCTATCTGGAATAAATGCTGTATTCTATTTTTCATCAGCCGTCTTTAAAAGTGCTGGTGTACCTTCAGACTCTGCAAACATATGTGTTGGAGTTAGCA ATTTACTGGGGTCAATAATTGCGATGGTTATGATGGATAAACTGGGAAGAAAGGTGCTACTTACTGGAAGCTTCTTTGGCATGGCAGTCTCAATGGGTCT TCAAGCAACTGCAGCTACTTCATTTGTGTCAAGCTTTGCAGCATTGTATCTATCAGTTGGAGGCATGCTGCTGTTTGTATTGATGTTTTCTCTCGGCGCT GGTCCAGTTCCTAGTCTCCTACTATCAGAAATATTTCCAAGCCGGATTAGGGCAAAGGCGCTGGCAATTTGCATGGCCGTGCATTGGGTTATAAATTTCT TTGTTGGCCTCTTGTTCTTGCGTTTACTGGAGCAAATCGGGCCCTTGGTCTTGTATACAGTCTTTGGAAGCTTTTGTCTGGTTGCTGTGTTTTTTGTGAA GAAAAATGTGTTGGAGACAAAAGGAAAATCACTCCAAGAGATTGAGATTGCACTTATGCCTCCAGAGTAA
AA sequence Show only first row Show all	>Potri.001G185300.1 pacid=42791283 polypeptide=Potri.001G185300.1.p locus=Potri.001G185300 ID=Potri.001G185300.1.v4.1 annot-version=v4.1 MRGRYVETVVTKKRASSRDFINAYDREESSGHLAIGTAKDAGNPHWRHSLVHVLVATLSSFLFGYHLGVVNETLETISFDLGFSGNTMAEGLVVSTCLGG AFVGSIFSGWIADGVGRRRAFQLCALPMIIGASMSATTKDLWGMLLGRFFVGTGMGIGPPVAALYVTEVSPAYVRGTYGSLTQISTCLGLLGSFVIGIPA KETMGWWRICFWVSAIPAAMLALFMEFCAESPHWLLKRGRSTEAEAQFEKLLGGSHVKSAIIELSKSDRGDEVDKVKLSEFLYGRYFKVVFIGSALFALQ QLSGINAVFYFSSAVFKSAGVPSDSANICVGVSNLLGSIIAMVMMDKLGRKVLLTGSFFGMAVSMGLQATAATSFVSSFAALYLSVGGMLLFVLMFSLGA GPVPSLLLSEIFPSRIRAKALAICMAVHWVINFFVGLLFLRLLEQIGPLVLYTVFGSFCLVAVFFVKKNVLETKGKSLQEIEIALMPPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	0	1
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	2.23	0.9296	Pt-ARPC1.1
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.002G134600 [exp]	5.65	0.9107
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	6.00	0.9017
AT5G56020			Got1/Sft2-like vescicle transp...		Potri.011G164900 [exp]	7.48	0.8798
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Potri.002G071600 [exp]	7.48	0.8941	Pt-VPS45.2
AT5G21070			unknown protein		Potri.009G158800 [exp]	7.54	0.9021
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180600 [exp]	8.06	0.8972
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	8.36	0.8880
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	8.83	0.8942
AT2G27090			Protein of unknown function (D...		Potri.004G197700 [exp]	9.16	0.8322

Compare expression of checked genes

Potri.001G185300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.