Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16170 723 / 0 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT3G48990 160 / 7e-43 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 132 / 1e-32 AMP-dependent synthetase and ligase family protein (.1) AT1G30520 125 / 3e-30 AAE14 acyl-activating enzyme 14 (.1) AT1G65060 122 / 3e-29 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G20510 120 / 2e-28 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 116 / 3e-27 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 112 / 4e-26 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 112 / 5e-26 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 112 / 6e-26 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144700 [exp] 161 / 5e-43 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G105900 [exp] 145 / 2e-37 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 139 / 3e-35 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 134 / 2e-33 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.018G094200 [exp] 124 / 5e-30 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 120 / 2e-28 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.011G164100 [exp] 118 / 5e-28 AT1G30520 645 / 0.0 acyl-activating enzyme 14 (.1) Potri.017G112800 [exp] 116 / 2e-27 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 112 / 4e-26 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035861 [exp] 680 / 0 AT3G16170 643 / 0.0 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) Lus10025801 [exp] 509 / 3e-177 AT3G16170 466 / 4e-161 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) Lus10039232 [exp] 164 / 5e-44 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 140 / 2e-35 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 140 / 9e-35 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 122 / 3e-29 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026143 [exp] 120 / 1e-28 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10026544 [exp] 119 / 2e-28 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 118 / 7e-28 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 113 / 3e-26 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G185500.1 pacid=42793256 polypeptide=Potri.001G185500.1.p locus=Potri.001G185500 ID=Potri.001G185500.1.v4.1 annot-version=v4.1 ATGATACTGTTTAGTTTGTTTTATTGGATGACTGGTGTGATCATTGCTTTGATGGATATCAATTGTGCCCGTCAATTATGTTCTCTCAAGAATCCTGCAT CGTCGCATCCCGGTACGCTTATGGAGGTCGTCAAGAAAGTTTATAGGCAAGGGACTGCAGCTGCTGATAGCATTGCTATCAGAGCTGAACATAAAAGTTA CAGTTACAAACAACTCATCTCATCTGCGTGGGAGATATCCGACCTGTTATGTAACAGTGGCTTAGAAACCGCTGATGGTGTAGGAGGATGTAAACATCTT GGTGGAGCTCGAATCGGAATCGTGGCTAAACCTTCAGCAGAGTTTGTTGCTGGGATACTAGCAACTTGGTTTAGTGGAGGTGTTGCAGTTCCACTAGCAC TCAGCTACCCAGAGACTGAGCTCTTACATGTGATGAATGATGCTGAGATATCTATGGTACTTAGCACTGAAGATCATCAGGAGTTGATGCAAAATGTTGC TGATAAATGTGCTGCTCAATTCTCTCTCATTCCGTCTGTTCACAGAATTTCTTCACATGAAAGTGTACATGATCATTCACAAGTTGAAGAAATAGCTTTA GAAAAAGGTGACGATCCAGCATTAATTATCTACACAAGTGGAACTACAGGGAAACCTAAAGGCGCAGTTCACACACACAAAAGCATCACTGCACAGGTTC AAACTTTGGCAGAAGCTTGGGAGTACTCATCCACTGATCAATTTCTCAATTGTTTACCGCTACATCATGTTCATGGATTTTTCAATTCTCTATTTGCCCC TATCTATGCAGGCTCCACGGTTGAGTTTATGCCAAAATTTAGTGTGAGGGGAATCTGGCAAAGATGGCGTGAATCTTATCCTCCTAATGGGAGTAAGGCT GATGATGCTATAACGGTGTTCACTGGGGTTCCAACAATATACTCTCGACTGATTCAAGGTTATGGAGCAATGGACTCAGATCAACAGGCAGCTTCTGCCT CTGCTGCAAGACAGTTGCGGCTGATGATGTCTGGCTCCTCTGCTCTCCCGCTTCCTGTCATGCAAGAATGGGAAGCCATCACTGGCCATCGCCTTTTGGA AAGATATGGCATGACTGAGTTTGTCATGGCAATATCAAATCCCTTAAGAGGTGTGCGGAAGGCAGGGACTGTGGGTAAACCATTTCCTGGGGTGCAGGTC AAAATTGCAGAAGATCAGAATGAAAATGATACAACAGGCGTGGGTGAGCTCTGCATCAGAAGTCCTTCCATGTTTAAGGAATATTGGAAACTTCCTCAGG TAACTGAGGATTCATTTACTGATGATGGCTTCTTCAGGACTGGGGATGCTGGTAAAATAGATGAAGATGGTTACTACGTCATTTTGGGACGTACAAGTGC AGATATCATGAAAGTTGGGGGATACAAATTATCTGCATTAGAAATTGAATCGGCACTTTTGGAGCACCCAGTTGTTGCAGAATGTTGCGTTTTGGGTTTG CCTGACAAAACCTATGGAGATGCTGTGTGTGCTATAATTGTGCCAGAGGACGCAGTAAAGAGAAAACAAGAGGAGTCATCAAAGCCTGCTATAAGCTTGG AAGAACTACGCGAGTGGGCTAAAGACAAACTTGCACCATACAAGCTACCTACTCGATTGTTTCTGTGGGAGTCACTGCCTCGTAATGCTATGGGAAAGGT AAACAAAAAGGAGTTGAAGAAAGTTCTTGCGGCTGAATAA
AA sequence Show only first row Show all	>Potri.001G185500.1 pacid=42793256 polypeptide=Potri.001G185500.1.p locus=Potri.001G185500 ID=Potri.001G185500.1.v4.1 annot-version=v4.1 MILFSLFYWMTGVIIALMDINCARQLCSLKNPASSHPGTLMEVVKKVYRQGTAAADSIAIRAEHKSYSYKQLISSAWEISDLLCNSGLETADGVGGCKHL GGARIGIVAKPSAEFVAGILATWFSGGVAVPLALSYPETELLHVMNDAEISMVLSTEDHQELMQNVADKCAAQFSLIPSVHRISSHESVHDHSQVEEIAL EKGDDPALIIYTSGTTGKPKGAVHTHKSITAQVQTLAEAWEYSSTDQFLNCLPLHHVHGFFNSLFAPIYAGSTVEFMPKFSVRGIWQRWRESYPPNGSKA DDAITVFTGVPTIYSRLIQGYGAMDSDQQAASASAARQLRLMMSGSSALPLPVMQEWEAITGHRLLERYGMTEFVMAISNPLRGVRKAGTVGKPFPGVQV KIAEDQNENDTTGVGELCIRSPSMFKEYWKLPQVTEDSFTDDGFFRTGDAGKIDEDGYYVILGRTSADIMKVGGYKLSALEIESALLEHPVVAECCVLGL PDKTYGDAVCAIIVPEDAVKRKQEESSKPAISLEELREWAKDKLAPYKLPTRLFLWESLPRNAMGKVNKKELKKVLAAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Potri.001G185500 [exp]	0	1
AT2G02410			unknown protein		Potri.003G046600 [exp]	43.01	0.5886
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.004G106300 [exp]	84.00	0.5440
					Potri.010G023150 [exp]	120.18	0.5129

Compare expression of checked genes

Potri.001G185500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.