Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80560 640 / 0 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT1G31180 622 / 0 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT5G14200 620 / 0 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT5G03290 134 / 3e-35 IDH-V isocitrate dehydrogenase V (.1) AT1G80555 127 / 3e-35 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT3G09810 129 / 2e-33 IDH-VI isocitrate dehydrogenase VI (.1) AT4G35650 115 / 8e-29 IDH-III isocitrate dehydrogenase III (.1) AT4G35260 107 / 9e-26 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT2G17130 104 / 7e-25 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT1G32480 60 / 3e-10 IDH-IV isocitrate dehydrogenase IV (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126700 [exp] 133 / 3e-35 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 133 / 3e-35 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.005G099600 [exp] 115 / 2e-28 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 109 / 1e-26 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 107 / 6e-26 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 105 / 4e-25 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030344 [exp] 642 / 0 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 622 / 0 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10002221 [exp] 132 / 9e-35 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 132 / 1e-34 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 131 / 2e-34 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 129 / 1e-33 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10041824 [exp] 114 / 3e-28 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10028374 [exp] 114 / 3e-28 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 94 / 6e-21 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 86 / 1e-18 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [poplar] [flax] Iso_DH PF00180 [poplar] [flax] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.001G185600.7 pacid=42790378 polypeptide=Potri.001G185600.7.p locus=Potri.001G185600 ID=Potri.001G185600.7.v4.1 annot-version=v4.1 ATGATTGCTTCTGCTTCCTCTATGCAGATTAATGCGCTGCATCCAATCAAACCCATTTTCCTTCTTAAACCTGCCTCCCTGAGACCAAGCAGAATCAGGT GCGCCGCTGCCACCACCAAGCAATCCAAACGCTACTCCATCACTCTTCTCCCTGGCGATGGCATTGGTCCCGAAGTCATCTCTGTCGCTAAAAACGTACT CAACCTTGCTGGGTCTCTTGAAGGGATTGAATTTAACTTTCAAGAAATGCCTATGGGTGGATCTGCTTTGGATATGGTTGGAGTTCCATTGCCGGACGAA ACCCTTTTGGCAGCGAAGAAATCTGACGCGGTTCTTCTTGGAGCCATTGGAGGGTACAAATGGGATAAAAATGAAAAACATCTGAAGCCAGAGACTGGAT TGCTTCAGCTTAGAGAAGGTCTTGAGGTCTTTGCGAATTTGAGGCCAGCAACTGTTTTGCCACAGCTAGTGGATGCTTCAACTTTAAAGAAAGAGGTTGC TGAAGGTGTTGATGTAATGGTTGTAAGAGAGCTTACTGGAGGTATTTATTTTGGGAAGCCAAGGGGTTTTGGCACCAATGAAGATGGTGAAGAGATAGGC TTCAATACCGAGGTGTATGCTACATACGAGGTTGATCGTATTGCACGTGTTGCATTTGAGACTGCTAGAAAGCGACATGGAAAACTTTGCTCAGTTGACA AAGCAAATGTCTTGGAGGCATCAATGTTTTGGAGAAAACGAGTGATCTCTATAGCGGCAGAATATCCTGATGTTGAGCTTTCACACATGTATGTTGATAA TGCCGCAATGCAGCTTGTCCGCAATCCAAAACAGTTTGACACAATAGTGACGAACAACATATTTGGCGATATACTATCTGATGAGGCTTCAATGATTACT GGAAGTATTGGGATGCTTCCATCTGCTAGTCTTGGTTCATCAGGACCTGGACTTTTTGAACCAATACATGGTTCTGCTCCTGACATTGCTAACCAGGATA AGGCCAACCCATTGGCAACTGTCCTGAGTGCTGCAATGCTTTTGAAGTATGGTCTGGGGGAAGAAAATGCTGCCAAGAGAATTGAGAATGCAGTCTTGGA TACCCTGAATAAGGGTTTTCGAACGGGTGATATTTACTCAGCTGGAAATAAATTAGTAGGATGCAAGGAAATGGGTGAAGAGGTGCTGAAATCAGTAGAC TCCCAAGTTGCTGCTGCTGTTTGA
AA sequence Show only first row Show all	>Potri.001G185600.7 pacid=42790378 polypeptide=Potri.001G185600.7.p locus=Potri.001G185600 ID=Potri.001G185600.7.v4.1 annot-version=v4.1 MIASASSMQINALHPIKPIFLLKPASLRPSRIRCAAATTKQSKRYSITLLPGDGIGPEVISVAKNVLNLAGSLEGIEFNFQEMPMGGSALDMVGVPLPDE TLLAAKKSDAVLLGAIGGYKWDKNEKHLKPETGLLQLREGLEVFANLRPATVLPQLVDASTLKKEVAEGVDVMVVRELTGGIYFGKPRGFGTNEDGEEIG FNTEVYATYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRVISIAAEYPDVELSHMYVDNAAMQLVRNPKQFDTIVTNNIFGDILSDEASMIT GSIGMLPSASLGSSGPGLFEPIHGSAPDIANQDKANPLATVLSAAMLLKYGLGEENAAKRIENAVLDTLNKGFRTGDIYSAGNKLVGCKEMGEEVLKSVD SQVAAAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Potri.001G185600 [exp]	0	1
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.009G077800 [exp]	1.41	0.8461
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.005G217700 [exp]	3.74	0.7512	TSA1.1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	4.24	0.8196	I.2
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.012G098500 [exp]	7.21	0.7293
AT3G56130			biotin/lipoyl attachment domai...		Potri.008G074100 [exp]	7.21	0.7952
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Potri.003G048700 [exp]	11.48	0.7576
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	11.53	0.7764
AT5G24840			tRNA (guanine-N-7) methyltrans...		Potri.006G277100 [exp]	12.44	0.7896
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.005G204100 [exp]	13.11	0.7049
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	16.15	0.7662

Compare expression of checked genes

Potri.001G185600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.