Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 785 / 0 Major facilitator superfamily protein (.1) AT3G16180 739 / 0 Major facilitator superfamily protein (.1) AT1G68570 385 / 1e-126 Major facilitator superfamily protein (.1) AT1G69870 370 / 9e-121 NRT1.7 nitrate transporter 1.7 (.1) AT5G62680 351 / 2e-113 Major facilitator superfamily protein (.1) AT1G18880 348 / 1e-112 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G27080 345 / 1e-111 NRT1.6 nitrate transporter 1.6 (.1) AT1G62200 343 / 2e-110 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G28470 338 / 3e-109 Major facilitator superfamily protein (.1) AT3G54140 338 / 4e-109 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240000 [exp] 614 / 0 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 600 / 0 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 588 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 582 / 0 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 578 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 577 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 574 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 573 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 568 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 777 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 738 / 0 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 555 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 464 / 3e-157 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 420 / 3e-141 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10037221 [exp] 410 / 1e-135 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 402 / 2e-132 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036669 [exp] 384 / 6e-126 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 375 / 8e-123 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10017817 [exp] 375 / 3e-122 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G185700.1 pacid=42792728 polypeptide=Potri.001G185700.1.p locus=Potri.001G185700 ID=Potri.001G185700.1.v4.1 annot-version=v4.1 ATGGAGAAGAACATGGAAGAGCCCTTGTCAAGCCAAGGGGAAATGACCCACCAGCACACTACCCCCAAACATTCAAAGGGTGGTCTCATTACCATGCCAT TCATTATTGCAAATGAGGCATTTGAGAAGGTAGCAAGCTATGGATTGATACCAAATATGATACTGTACCTGATGAGAGATTACAGCGTGGGAGTAGCGAA GGGGACCAACATCCTCTTCCTCTGGACTGCTGGTACAAATTTCATGCCAATTTTGGGAGCTTTAATCTCTGATTCATACTTAGGCCGCTTCCTCACCATT GGCCTGGGTTCCATCTCCAGTCTCTTGGGAATGATCCTACTGTGGTTAACAGCAATGGTTCCCAAAGTTAGGCCTCCTCCCTGTGACATAACAACTCAAA GCTGTAAAACCCCAACAACGGGCCAGATGACTCTGCTGTTGTCCTCCTTCGCATTGATGTCCATTGGAGCTGGTGGCGTTAGACCATGTTCCATAGCATT TGGTGCTGACCAATTGGACAACAAATCTAACCCGAAAAATGAAAGGGTCTTGGAGAGCTTCTTTGGCTGGTACTATGCCTCGGCAGCTATTTCTGTCTTG ATTTCTCTGACGGCTATAGTTTATATTCAAGATCATCTTGGTTGGAAAGTAGGATTTGGAGTTCCTGCAATCCTTATGTTCCTCTCTGCTTTGTTGTTCT TCTTTGCTTCTCCATTTTATGTAAAGCAAAAACCAAGTAAAAGCTTGTTCACTGGCTTTATACAAGTGCCTGTCGTTGCTTACAAGAACAGAAAACTCGC ATTCCCGCCCAGAGACTCTGATGGTTGGTACCATCACAAGAGGGACTCAAAGTTTATTGCGCCAACAACCAAACTAAGGTTCTTGAACAAGGCTTGCATC ATCAGAAATCCTGAACAAGATATAGCCTCAGATGGATCGGCATCAAATCCGTGGAGTCTATGCACAATAGAGCAAGTTGAAGAACTCAAGGCGCTTCTTA AAGTCATCCCATTGTGGTCCACTGGGATAATGATATCCATAAACATTAGCCAAAGCACTTTTCAATTGCTCCAAGCAAGTTCCATGGACCGACACATTTC TTCCAGCTTTCAAATCCCAGCTGGCTCTTTTGGTATGTTCACAATCATCTCTCTGGCAACATGGGTTATCCTCTATGATCGCGCTATCCTTCCCTTGGCA TCTAAAATAAAGGGCAAGCCAGTGCAGTTAGGTGCTAAACTAAGGATGGGAATTGGCCTATTTCTCTCCTGCATGGCCATGGTAGTTTCCGCAATAGTTG AGAGCATTCGGCGAAGGAAAGCAATCCGGGAAGGGTATTTGAACAATGCTCATGCGGTATTGGATATGTCTGCAATGTGGCTTGTGCCGCAATATTGCTT GAATGGATTGGCAGAAGCCTTCAACGCAATAGGCCAAACAGAGTTTTATTACTCAGAGTTCCCTAAGAGCATGTCTAGTATTGCAGCTGCACTATTCGGA TTAGGAATGGCTGTGGCAAACTTATTAGCAAGTGCTATACTAAGCGCAGTTGATAAGCTCACTTCAAGAGGGGGCAAAGAGAGCTGGGTTTCAAATAACA TTAACAAGGGTCATTATGATAACTACTACTGGCTTCTTGCCATAATGAGTTCTGTTAATTTGCTATATTTTCTAGTATGTAGCTGGGCTTACGGACCTTG TGTGGAGCGAGTAATAAAGGTCAGTGATGAGGGGAATGGCTTTAAGGAGGAAGAATTTTCTAATATAGGAGCTATTGTTAAAGACGAAGTATAA
AA sequence Show only first row Show all	>Potri.001G185700.1 pacid=42792728 polypeptide=Potri.001G185700.1.p locus=Potri.001G185700 ID=Potri.001G185700.1.v4.1 annot-version=v4.1 MEKNMEEPLSSQGEMTHQHTTPKHSKGGLITMPFIIANEAFEKVASYGLIPNMILYLMRDYSVGVAKGTNILFLWTAGTNFMPILGALISDSYLGRFLTI GLGSISSLLGMILLWLTAMVPKVRPPPCDITTQSCKTPTTGQMTLLLSSFALMSIGAGGVRPCSIAFGADQLDNKSNPKNERVLESFFGWYYASAAISVL ISLTAIVYIQDHLGWKVGFGVPAILMFLSALLFFFASPFYVKQKPSKSLFTGFIQVPVVAYKNRKLAFPPRDSDGWYHHKRDSKFIAPTTKLRFLNKACI IRNPEQDIASDGSASNPWSLCTIEQVEELKALLKVIPLWSTGIMISINISQSTFQLLQASSMDRHISSSFQIPAGSFGMFTIISLATWVILYDRAILPLA SKIKGKPVQLGAKLRMGIGLFLSCMAMVVSAIVESIRRRKAIREGYLNNAHAVLDMSAMWLVPQYCLNGLAEAFNAIGQTEFYYSEFPKSMSSIAAALFG LGMAVANLLASAILSAVDKLTSRGGKESWVSNNINKGHYDNYYWLLAIMSSVNLLYFLVCSWAYGPCVERVIKVSDEGNGFKEEEFSNIGAIVKDEV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	0	1
AT3G50780			unknown protein		Potri.005G129700 [exp]	1.41	0.8964
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G053800 [exp]	1.73	0.8782	Pt-IAA8.1
AT3G03620			MATE efflux family protein (.1...		Potri.015G139400 [exp]	2.00	0.8726
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.011G145100 [exp]	2.00	0.8819
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.010G226250 [exp]	2.44	0.8614
AT1G67570			Protein of unknown function (D...		Potri.012G094700 [exp]	4.00	0.8560
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.008G066400 [exp]	4.47	0.8293	LAX1.1,PtrAUX4
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.008G061300 [exp]	5.47	0.8690	RAB11.9
AT2G41990			unknown protein		Potri.009G140600 [exp]	6.92	0.8430
AT2G40815			Calcium-dependent lipid-bindin...		Potri.019G065500 [exp]	7.07	0.8500

Compare expression of checked genes

Potri.001G185700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.