Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28780 211 / 1e-60 PIF1 helicase (.1) AT3G51700 195 / 9e-55 PIF1 helicase (.1) AT3G51690 174 / 1e-47 PIF1 helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032376 [exp] 2328 / 0 ND / Potri.011G042150 [exp] 2051 / 0 AT5G28780 174 / 1e-47 PIF1 helicase (.1) Potri.009G002650 [exp] 1639 / 0 AT5G28780 154 / 1e-40 PIF1 helicase (.1) Potri.013G071501 [exp] 1513 / 0 AT5G28780 127 / 1e-31 PIF1 helicase (.1) Potri.001G165240 [exp] 1224 / 0 AT5G28780 171 / 1e-46 PIF1 helicase (.1) Potri.012G073100 [exp] 466 / 5e-153 AT5G28780 174 / 8e-52 PIF1 helicase (.1) Potri.008G203701 [exp] 459 / 1e-147 AT5G28780 70 / 5e-13 PIF1 helicase (.1) Potri.008G167001 [exp] 410 / 9e-133 AT5G28780 220 / 2e-70 PIF1 helicase (.1) Potri.009G007400 [exp] 404 / 3e-130 AT5G28780 208 / 2e-65 PIF1 helicase (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02689 [poplar] [flax] Herpes_Helicase Helicase CL0023 [poplar] [flax] P-loop_NTPase PF05970 [poplar] [flax] PIF1 PIF1-like helicase CL0023 [poplar] [flax] PF14214 [poplar] [flax] Helitron_like_N Helitron helicase-like domain at N-terminus
Representative CDS sequence Show only first row Show all	>Potri.001G185950.1 pacid=42789577 polypeptide=Potri.001G185950.1.p locus=Potri.001G185950 ID=Potri.001G185950.1.v4.1 annot-version=v4.1 ATGATTCCTGACCAATATAATATCATCGGTCAATCTTCTTATCAAAAAAAAAGAAAACAGCGTTTGGCACGTTCATCAAAGAAAAACCCCTCCTTTACAT CATGTTGTGCTAATGGCAAAATCCAATTGCCTGCTGCTCCTAACACACCTCAATTTCTAGATGATCTTTTAAATCCTGACAAAGGTTCATTGTCCATCAA ATTCCGGCATAACATTCGTGCTTATAATTCAATGTTTGCTTTCACTTCAATGGGAGCGCAGATTGATCATACTGTCAATTCTCAACCAGGGCCATATATA TTTAAAATAAATGGACAATGTCATCATCTTATGGGATCATTAGTACCAATTGATGCTGAATCACCAAGATTTGCACAACTATACATCTTTGACACAGACA ATGAAATTGCTAATCGACTACACCCTTTTAATAATGATAATTGTCAATCATCTTTAGATGAAAATGTTGTCAACAAACTTATTGACATGCTTGATTCTTC CAATGCATTGGTTAAATTGTTTCGTCAAGTTAGACATAGACTTAACAATGATGAATTCCCGAATTTCAAACTTCGTTTAATTGGGAAAAGAGATGGTGAC TCAAAGCAATATGATGATCCTTCCTCTAATGATGTATGTGGTTTAATTGTTGGCGATATTGGAGAATCACAAACTGATAGAGATATTATTATTGAAGGTT ATTCTAGAAATCTCCGCAGGATCTCTAAATTGCATCCAAAATTTATGTCTCTTCAGTATCCACTCTTATTTCCTTATGGTGAAGATGGCTATCATACTGA CATTTTATTCACAAATCAAGAGCATTATACTCCTTCAAAACGTCAAAAAGTTACAATGCGAGCATATTATGCTTATGTCATTCAAGAAAGATTAGGAGAT AGTAGTACACTTACCAAAGGCGGAAGACTTTATCAACAATTTTTAGTTGATGCATTTATGAATGTTGAACAAGAACGCCTTGATTTCATTCGCTCAAACC AAGAAAATCTGAGAACTGAATCTTATAAAGGTGTCCAAGACGCAGTTTTAAGAGGTGATGTTAATGGTTCAAGTACTGGAAAAATCATCCTCCCCTCTTC TTTAACTGGAAGCCCTAGATACATGATTAACAATTATCATGATGCAATGGCTATATGTCGTCATTATGGTAATCCTGACCTTTTTATTACATTCACTTGC AATGTCAATTGGCCTGAAATTCAAAGAGAAATTAAAAAAAGCCGAAATTATAAAGCTGAAGACAAACCTGACATAATTGGAAGAGTATTTCGATACAAAC TTAATGATATGATTTCATTCATTAAATCAGGACAGCCCTTCGGGAAAACAATTGCTGATGTTTGTGCTATTGAATTCCAAAAAAGAGGCTTGCCGCACAC TCATTTATTGATTTGGCTAGCTTCTGAATACAAATTTCGATCACCTCAGGATGTCGATTCAGTTATTTCGGCTGAACTGCCAAACAAAGCAGATGATCCT CATTGCTATGCAATTGTTTCAAAATTTATGCTGCATGGTCCATGCGGAATTGCTAGCCCAAAAGCCCAATGTATGAAGGGAAATCAATGTTCAAAAAAAT TCCCTAAAAAGTTTAAGCAATCAACGGTTTTCGGTGAAAATGGCTTTGTGTTTTACAAGCGACGAAATTTCCCTGCGTCATTTGTTATGAAAAATGGAAT TGCTCTCTCTAATTCCTATGTTGTCCCATACAACAAAGAGCTTCTAATCCGTTATAATGCTCATGTTAATGTTGAAATTTGTTGCCAATCAATGCTCATA AAATATCTTTTCAAATATGTTAGCAAAGGATCTGATAGGTGTCGAGCTGTTATTCAAGGTCAAACAAACGATGAGATTCAGGCTTATCTTAATTGTAGAT TTGTTTGTCCTTATGAAGCTGTATGGCGACTCTTACAATTTCCAATCCATTCAAGAAACCCAGCAGTTGAAAGACTTCAAATACATTTGCCAATGCAACA TTCTGTTGTTTTCTTTGGAAATCAAAACTTATCTTCTGTTTTAAGAAAAAATGGTCTCAATAAGACAATGCTCACAGGATGGTTTGATCAGAACAAAGAA GATGTTGAAGCAACACAGTTATATTACTCGCAATTTCCAAACAAATATGTTTGGGATGCTAGGCAGAAAGAATGGATTTACAGAACAAGAGGTTTTTCAC TTGGACGTATAACATATGTGCATCCTGCTGCTGGCGAATTGTATTTCTTAAAGATGCTTTTAAATCATGTTAAAGGAGCTACAAGCTTTGAATATCTACG TTGTGTCTCTGGTATTGTTTATCCAACCTTTCAACTCGCCTGCAAAGCACTTGGTCTCCTTGATGATGGCAAAGAATGGGCTGAAGCTTTTTCAGAAGCT GTTTTAACTGCTTCCTCCTCACAACTTAGGCAACTATTTGTCAGTGTCACTCTATTTTGTCAAATTGCTAACCCCCAAGATTTGCTTGATCAATTTTGGC ACACAATGCATGACGACATTAGAATCAAGCTATCATCTTTCTCCCCACATAATCTTCATTTCAGTGATAATGAACTTAAAAATTATGTTCTTTATGAACT TGAACAACTTTTCAATGCCTTGGCAACATCCCTCAAAGACTATAATTTACCACTGCCAAATGATCGTTTGATGTCTGAAATTAGAAATAATCTCCTTAGA GAAGAACTCAATTATGATATTTCTGAACTTCGAAGCAATAATGAAGCATCAATTTCATTACTTAACACATGCCAAAAGAAAATTTATGATCGAGTTATGG AATCAATTTCAAAAAATCAACAATCTCTTATTTTTGTTTACGGGCATGGTGGCACAGGGAAAACTTTTTTATGGCATTCACTTATTAATAGTATTAGATC AGAAGGGTTAATTGTTCTTGCTGTTGCATCATCAGGAATCGCATCTATTCTGCTCCCTGGTGGTCGCACAGCTCACTCAAGGTTTAAGATTCCTCTTGCT ATAAATGAGAACTCAACATGTGAAATAAAAAAAAATACTCATCTTTCAAGGTTGATTGAAACGACAACACTTATTGTATGGGATGAAGCTCCTATGAATA ATCGCTACTGTTTTGAAACATTGGATAGATCATTACGTGATATAATGGGCCAAACTGGTCATTCCAATCATAACCAACCTTTCGGTGGGAAATCTATTTT ACTTGGTGGGGATTATCGTCAAATTCTCCCTGTTATACCTGGAGGAACAAAAGAAGATATTATTAATGCTTCCTTAAGTAGTTCACCACTCTGGCCAAAA TTTGAAATCATGTTGCTAAAACAAAATATGAGATTGTCAATTGCTGGTCTTGGTTCAGATGAAATCAATGAAATTAAAACATTTGCTAAATGGATTCTTA AAATAGGTGACGGAGACCTTTGTGATATACCTTTTTTTGATGAACTTGATGAATCTTTGATTAAAATTCCATGTGATTTGCAACTACATACCTCTGGTGA TCCAATTAAAGCTATGGTTTCAGCTATTTATCCCAGCATTGAACAACCTGCTCTTGAACCATTTTACTTTAAAGAAAGAGCTATTATCACACCAAAAAAC ATTACTGTTACTGAAATCAATAATTTCATACTTGGAGTTACACATGGTCCTCAACGCATTTATCTTAGCAATGATTCTGTTGATGCATCTTCCAGTGATA ACGACAATATAAACTTATTATATCCATTGGAATTTATAAACCAACTTGAGTTCAGTGGTGTTCCTTCGCACATTCTTGCTTTGAAAATAGGAGCGCCAAT TATGTTGCTGAGGAATCTGAGTCCAATGATAGGCTTATGTAATGGAACACGACTAATCATCACACAACTTGCTGATAGAGTTATTGAAGCTCAAATTATA ACAGGCTCACACATTGGTGACCGAGTTTTTATACCAAGGATCATCTTCCCAATTAATGATGACAAATGCCCATTTACAATCAAACGAAGACAATTTCCAA TACGATTATGCTATGCTATGACAATCAATAAAAGTCAAGGACAATCATTAAAATTTGTTGGTGTTTTCTTAAAGGAGCAAGTTTTTGCACATGGCCAACT ATATGTCGCTCTTTCAAGAGTTACATCTAAAAAAGGTTTAAAAATCATTTCATGTGACCAAGAAGGAAAACAGCTTGATTATGCTAAAAATATTGTCTAC AAAGATGTCCTCAATTTATTGCCCAAAGGTCTTTTTCCCATTCAAAATGATTTCTAA
AA sequence Show only first row Show all	>Potri.001G185950.1 pacid=42789577 polypeptide=Potri.001G185950.1.p locus=Potri.001G185950 ID=Potri.001G185950.1.v4.1 annot-version=v4.1 MIPDQYNIIGQSSYQKKRKQRLARSSKKNPSFTSCCANGKIQLPAAPNTPQFLDDLLNPDKGSLSIKFRHNIRAYNSMFAFTSMGAQIDHTVNSQPGPYI FKINGQCHHLMGSLVPIDAESPRFAQLYIFDTDNEIANRLHPFNNDNCQSSLDENVVNKLIDMLDSSNALVKLFRQVRHRLNNDEFPNFKLRLIGKRDGD SKQYDDPSSNDVCGLIVGDIGESQTDRDIIIEGYSRNLRRISKLHPKFMSLQYPLLFPYGEDGYHTDILFTNQEHYTPSKRQKVTMRAYYAYVIQERLGD SSTLTKGGRLYQQFLVDAFMNVEQERLDFIRSNQENLRTESYKGVQDAVLRGDVNGSSTGKIILPSSLTGSPRYMINNYHDAMAICRHYGNPDLFITFTC NVNWPEIQREIKKSRNYKAEDKPDIIGRVFRYKLNDMISFIKSGQPFGKTIADVCAIEFQKRGLPHTHLLIWLASEYKFRSPQDVDSVISAELPNKADDP HCYAIVSKFMLHGPCGIASPKAQCMKGNQCSKKFPKKFKQSTVFGENGFVFYKRRNFPASFVMKNGIALSNSYVVPYNKELLIRYNAHVNVEICCQSMLI KYLFKYVSKGSDRCRAVIQGQTNDEIQAYLNCRFVCPYEAVWRLLQFPIHSRNPAVERLQIHLPMQHSVVFFGNQNLSSVLRKNGLNKTMLTGWFDQNKE DVEATQLYYSQFPNKYVWDARQKEWIYRTRGFSLGRITYVHPAAGELYFLKMLLNHVKGATSFEYLRCVSGIVYPTFQLACKALGLLDDGKEWAEAFSEA VLTASSSQLRQLFVSVTLFCQIANPQDLLDQFWHTMHDDIRIKLSSFSPHNLHFSDNELKNYVLYELEQLFNALATSLKDYNLPLPNDRLMSEIRNNLLR EELNYDISELRSNNEASISLLNTCQKKIYDRVMESISKNQQSLIFVYGHGGTGKTFLWHSLINSIRSEGLIVLAVASSGIASILLPGGRTAHSRFKIPLA INENSTCEIKKNTHLSRLIETTTLIVWDEAPMNNRYCFETLDRSLRDIMGQTGHSNHNQPFGGKSILLGGDYRQILPVIPGGTKEDIINASLSSSPLWPK FEIMLLKQNMRLSIAGLGSDEINEIKTFAKWILKIGDGDLCDIPFFDELDESLIKIPCDLQLHTSGDPIKAMVSAIYPSIEQPALEPFYFKERAIITPKN ITVTEINNFILGVTHGPQRIYLSNDSVDASSSDNDNINLLYPLEFINQLEFSGVPSHILALKIGAPIMLLRNLSPMIGLCNGTRLIITQLADRVIEAQII TGSHIGDRVFIPRIIFPINDDKCPFTIKRRQFPIRLCYAMTINKSQGQSLKFVGVFLKEQVFAHGQLYVALSRVTSKKGLKIISCDQEGKQLDYAKNIVY KDVLNLLPKGLFPIQNDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28780			PIF1 helicase (.1)		Potri.001G185950 [exp]	0	1
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.001G038500 [exp]	2.00	0.6805
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.006G277900 [exp]	12.68	0.6023
AT3G05610			Plant invertase/pectin methyle...		Potri.005G022900 [exp]	13.00	0.6333	PEF1.2
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	14.49	0.6588
					Potri.005G091501 [exp]	49.95	0.6001
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.017G067900 [exp]	71.04	0.5809
					Potri.003G162550 [exp]	89.43	0.5622
AT1G40390			DNAse I-like superfamily prote...		Potri.003G066101 [exp]	109.32	0.5223
AT2G33580			Protein kinase superfamily pro...		Potri.015G085400 [exp]	160.02	0.5585
					Potri.014G100650 [exp]	215.33	0.5273

Compare expression of checked genes

Potri.001G185950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.