Plant FIBer expression Database

Pt-TED3.2 (Potri.001G186000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-TED3.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79810 491 / 7e-176 PEX2, TED3, ATPEX2 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G051500
[exp]
597 / 0 AT1G79810 503 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037580
[exp]
509 / 0 AT1G79810 508 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Lus10006832
[exp]
501 / 7e-180 AT1G79810 508 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
CL0229 PF04757 Pex2_Pex12 Pex2 / Pex12 amino terminal region
Representative CDS sequence
>Potri.001G186000.1 pacid=42789949 polypeptide=Potri.001G186000.1.p locus=Potri.001G186000 ID=Potri.001G186000.1.v4.1 annot-version=v4.1
ATGAGTAGTTCTAATCTTTCACAACAACCACCACCAGAGGATGAATGGATTCGCACTTACCTAAAATTGCTTCCTGAATGGCAGCCTCCTGCCCTTTCTC
ACCAGTCGATGATACCAATTTCAATATCTAGAGTTAATCAATTTGATGCTGCAAGATTGGATATTGAAATGTCAGCTATGTTAAAGGAACAATTGGTTAA
GGTCTTCTCTCTGATGAAGCCAGGAATGTTATTTCAATATGAGCCAGAACTTGATGCTTTCCTTGAGTTTCTCATTTGGAGGTTCTCTATTTGGGTAGAT
AAGCCCACTCCAGGAAATGCTCTCATGAATCTGAGGTACAGAGATGAACGTGCAATGGATTCGATAGGAAAAGTTAGAACAGGTTTGGAAGGACCTGGAC
TGACCATTGCACAGAAAATTTGGTATTGCATTGCCACTGTTGGTGGTCAGTACACCTGGGCTCGTTTACAGTCATTCTCTGCCTTTCGTAGATGGGGTGA
TTCTGAACAGAGGCCACTGGCAAGGCGTGCATGGATTTTGATACAACGTATTGAAGGACTTTATAAAGCTGCTTCATTTGGAAACCTACTAATATTTCTT
TATACAGGACGATTTAGAAACCTCATTGAAAGAGTCTTGCAAGCAAGGCTTGTCTATGGAAGCCCTAATATGAACCGAGCAGTTAGCTTTGAGTATATGA
ATCGCCAATTAGTGTGGAATGAATTTTCGGAGATGTTGCTGCTGCTACTACCTCTTCTTAACTCGTCGTCCATTAAAAAATTTCTTAGCCCATTTTCAAA
GGATAAATCTTCAAGCTCCAAAGTAGATGATGATACTTGCCCCATTTGCCAGGCAATTCCCACTATTCCATTTCTTGCTCTTCCCTGTCAGCACAGGTAC
TGCTACTACTGCCTTAGTACACGATGTGCTGCAGCTACATCTTTTCGCTGTCCCAGATGCGGCGAGGCAGTGGTTGCTATGCAGCGCCATAGCAGTTTAG
CCAGTAATACAAATCCCAATCAGTGA
AA sequence
>Potri.001G186000.1 pacid=42789949 polypeptide=Potri.001G186000.1.p locus=Potri.001G186000 ID=Potri.001G186000.1.v4.1 annot-version=v4.1
MSSSNLSQQPPPEDEWIRTYLKLLPEWQPPALSHQSMIPISISRVNQFDAARLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVD
KPTPGNALMNLRYRDERAMDSIGKVRTGLEGPGLTIAQKIWYCIATVGGQYTWARLQSFSAFRRWGDSEQRPLARRAWILIQRIEGLYKAASFGNLLIFL
YTGRFRNLIERVLQARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSIKKFLSPFSKDKSSSSKVDDDTCPICQAIPTIPFLALPCQHRY
CYYCLSTRCAAATSFRCPRCGEAVVAMQRHSSLASNTNPNQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79810 PEX2, TED3, ATP... ARABIDOPSIS PEROXIN 2, Pex2/Pe... Potri.001G186000
[exp]
0 1 Pt-TED3.2
Potri.012G007866
[exp]
12.00 0.9246
AT4G25770 alpha/beta-Hydrolases superfam... Potri.018G096035
[exp]
15.58 0.9092
Potri.012G008845
[exp]
16.73 0.9239
AT4G23330 unknown protein Potri.001G103800
[exp]
19.67 0.8221
AT3G59780 Rhodanese/Cell cycle control p... Potri.019G098950
[exp]
21.81 0.9068
AT5G11390 WIT1 WPP domain-interacting protein... Potri.004G111350
[exp]
22.58 0.9215
AT4G14805 Bifunctional inhibitor/lipid-t... Potri.010G085000
[exp]
25.29 0.9210
Potri.012G007445
[exp]
28.46 0.9209
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.006G010800
[exp]
28.98 0.9206
AT3G47930 ATGLDH "L-galactono-1,4-lactone dehyd... Potri.006G043232
[exp]
29.18 0.7165

Potri.001G186000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.