Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16200 688 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051200 [exp] 790 / 0 AT3G16200 687 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006829 [exp] 699 / 0 AT3G16200 707 / 0.0 unknown protein Lus10037579 [exp] 687 / 0 AT3G16200 710 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G186200.1 pacid=42792012 polypeptide=Potri.001G186200.1.p locus=Potri.001G186200 ID=Potri.001G186200.1.v4.1 annot-version=v4.1 ATGCACACTCTAGTACACAGTCCCTCTGCCACCACCAATATGCTAGACCGAGTCCTCTCTTCGCGCCGTGTCACTTCCCACCTTGACGACGCTGAGACGG ACGCCTCCGCCGACGACTCCAAGACCAAGAAACAGAACCTCTCTTTATTGGCTTCTAATTACCTCTCTCGCGTGTCCCTCTTTTGCATCTGCCCCACCGC TTGTCTCCTTATCTGTCTCTTATTAGCTGTCATTCTGATCACTTCTCTCGCTTTTCATTCCCGGAGTTTTGTCTGTGTCTCCGATCCGGGATCTCGCGCC GGGTTCTTCGGTCTCGAAGGGCTTGAGTCAGACTTTGGATCACTTGGTGTTCCCTGGTGCAGATCGAAACATGGAAAAACAGTTCAGTGGACATCCAAGG ATTTAATCAAAGGCTTGGAAGAGTTTGTACCAATTTACGAATCTCGCCCTATAAAAAACAACATGTATGGGATGGGTTTTGACCACAGCTTTGGGCTATG GTTCACTGCAAGGTGGCTGAAGCCAGTTCTAATGATTGAGAGTGGTGCTTTCAAGGGGCATTCCACTTGGGTTCTGCGACAAGCAATGCCAGACACACCT ATTATTTCTCTTTCGCCCAGGCATCCTGAGAAGTACCTCAAGAAGGGACCTGCATATGTTGATGGTAATTGCACATACTTAGCTGGAAAAGATTTTTTAG ATTTTGGAAGTGTTGATTGGAAGAGCATGATGAAAAAACATGGGATTACTGATCTCAGTCGAGTTCTTATCTTTTTCGATGACCATCAAAATGAATTGAA GAGAGTAAAGCAGGCATTGGATGCTGGTTTTCGGCATCTTGTGTTCGAGGATAATTATGATACTGGAACTGGAGATCATTATTCCTTGAGGCAGATATGC GATCAGTCCTATATAAGAGGAGGTGGCCATAGTTGCTTTAGGGACAGTGATGAAGCTAGGATTAGATTGAAAAGGAAGTTGTTCTGGGAGAAGGCAGTTG GTATAGATGAACTATGTGGACCGAATGAAGCATGGTGGGGTGTTGGGGGCTGGATGCGGGATGATTTCAATCACAGTAATAAACCAATTTCCTACTCAGA ACATTTTCAGAACAGCAGGTTCATTGAATCAATTCTCGATGTTTACTGGGAGCTCCCTCCTGTAGCCGGCCCTTCCCTCACTCATCAAACACGATATGAT CCTGCTCGCGCTACCAGTCCTATTGTTGAAGATGGCCGTTATGGCTTGTTCCAGCGGCTGGGATTAAGTAGACTTGATCGTTCTGTATTTAATGGTTATA CCCAGATGGTTTATCTTGAAATCTCTGAACAAGAATCTTAA
AA sequence Show only first row Show all	>Potri.001G186200.1 pacid=42792012 polypeptide=Potri.001G186200.1.p locus=Potri.001G186200 ID=Potri.001G186200.1.v4.1 annot-version=v4.1 MHTLVHSPSATTNMLDRVLSSRRVTSHLDDAETDASADDSKTKKQNLSLLASNYLSRVSLFCICPTACLLICLLLAVILITSLAFHSRSFVCVSDPGSRA GFFGLEGLESDFGSLGVPWCRSKHGKTVQWTSKDLIKGLEEFVPIYESRPIKNNMYGMGFDHSFGLWFTARWLKPVLMIESGAFKGHSTWVLRQAMPDTP IISLSPRHPEKYLKKGPAYVDGNCTYLAGKDFLDFGSVDWKSMMKKHGITDLSRVLIFFDDHQNELKRVKQALDAGFRHLVFEDNYDTGTGDHYSLRQIC DQSYIRGGGHSCFRDSDEARIRLKRKLFWEKAVGIDELCGPNEAWWGVGGWMRDDFNHSNKPISYSEHFQNSRFIESILDVYWELPPVAGPSLTHQTRYD PARATSPIVEDGRYGLFQRLGLSRLDRSVFNGYTQMVYLEISEQES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16200			unknown protein		Potri.001G186200 [exp]	0	1
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	4.00	0.9216	KOR1.2
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G048800 [exp]	5.91	0.9065
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	6.48	0.9034
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	6.63	0.9140
AT1G63300			Myosin heavy chain-related pro...		Potri.001G106700 [exp]	7.74	0.8902
AT1G53040			Protein of unknown function (D...		Potri.001G399800 [exp]	8.36	0.8937
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076101 [exp]	9.16	0.8808
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	11.13	0.9071
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	14.86	0.8893
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	15.55	0.8799

Compare expression of checked genes

Potri.001G186200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.