Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23330 718 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 417 / 1e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 392 / 4e-127 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 394 / 3e-126 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 382 / 3e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 382 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 374 / 3e-119 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 367 / 7e-118 MEF22 mitochondrial editing factor 22 (.1) AT4G21300 369 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 361 / 6e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 417 / 3e-135 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 400 / 7e-130 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 387 / 2e-125 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 390 / 3e-125 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 387 / 8e-125 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 387 / 2e-124 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 387 / 4e-123 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 378 / 4e-121 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G021300 [exp] 375 / 5e-121 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010850 [exp] 802 / 0 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10024381 [exp] 795 / 0 AT3G23330 777 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 394 / 6e-127 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 385 / 1e-124 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 384 / 2e-124 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 383 / 5e-123 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 384 / 1e-122 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 383 / 2e-122 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018897 [exp] 389 / 1e-120 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 373 / 3e-119 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G186500.1 pacid=42792944 polypeptide=Potri.001G186500.1.p locus=Potri.001G186500 ID=Potri.001G186500.1.v4.1 annot-version=v4.1 ATGACTGCACAGACCATTTTCAGAACACTCCTTGACAGACCAAACATCATAAGCTCAAAGTACCAGGCCAAACAACTACATGCCCAAATCCTTAAATTGG AGCCCTCCTCTCCTATTCACCTCTCCAGACTAATTTCCATCTACTCCAACTTCAACCTCTTACATGAATCTCTCCTTCTCTTCAACGCTCTCCACTCCCC ACCAGTTCTTGCTTATAAATCCATCATCAGATGCTATGTTGCCAATGGCCTTCTTGTTCAATCAGTGGCCTTATTTTTGCAAATGAGAGCTTCTGGTAAA AAACCAGATCATCATGTGTTTCCTTCTTTACTTAAATCATGCGCATTGTTATCGGATTTAAAATTAGGCGAGTCGATCCATGGATGCATTATTAGGTTGG GTATGGACTTTGATTTGTATACATGCAATGCCCTTATGAATATGTATGGAAAATTTCAGAAAGTATTCGCTGCTATGGATAGCTTCTCTATCAAGTTCAG GATTGAGTCAGCACATGATCAAAATGTTACTTTGGATCAAACTAGTTATATTTTCCCTAAAACTAATGCAAATAGCACAATCCTCGATCAGTGTTACAGA AAAAGAAATTGCAGTTATATGGTAGAGGTGAATAGAAGGGGTTCAATAATGGATAGTGTGAAAAAGGTTTTTGAGAAGATGCTGAAAAGAGATGTTGTTT CGTGGAATACAGTGATTGCAGGGAATGCAGAGAATGGAAAGTATGAAGAAGCGTTAATGCTGGTTAGGGAGATGGGAAATGACAATTTGAAGCCTGATTC ATTCACCTTGTCTAGTGTGCTTCCTATCTTCGCAGAATATGTGGACCTTCATAAGGGGAAGGAGATTCATGGATATGCCATGAGACATGGCTTTGACAAT GATGTCTTTATTGGTAGTAGCTTAGTTGGCATGTATGCAAAGTGTGCTCGAGTGGAAGATGCCCTCCAGGTTTTTAACATCTTACCTCAACGTGACAGCA TTTCATGGAACTCTATTATTGCAGGGTGTGTGCAGAATGGATTATTTGATGAAGGCTTGAGATTCTTTCACCAGATGTTGAAAGCCAAAGTTAAGCCTGT ACCCGTTTCCTTTTCCAGTATCATGCCAGCTTGTGCTAACCTTATTGCATTGCATTTAGGAAAGCAGCTTCATGGATTCATAATCAGAGTTGGATATGAT GACAATATGTTTGTTTCTAGTTCACTTGTAGACATGTATGCCAAATGCGGGTATATTAAGGTTGCTAGATGGATTTTTGATAGAATGGATGTACATGACA TGGTCTCATGGACGGCTATAATCATGGGATACGCATTGCATGGACAAGCTTGTCATGCTGTTTCTTTATTTGAACAAATGGAAATGGAGGGAGTGAGGCC AAACTATGTGGCTTTTGTGGCTGTATTGACTGCTTGTAGTCATGCTGGCATGATGAATGAAGCCTGGAGATATTTTAACAGTATGACTCAGAATTATGGG ATTGTTCCAGGATTGGAACACTATGCTTGCATGGCAGACCTTCTTGGTCGAGCAGGAAAGTTAGATGAAGCCTTTGAGTTAATCTCCAGTATGCATAGAC CTGTGGAGGGTATTTGGCTGTCATTGCTTTCTGCTTGTAGAGTCCATAAAAATGTTGACTTGGCTGAAAAGGTTGCCGAGAAGATATTTGAGGTTGATCC AGAAAATACCGGGGCATACATTCTCTTATCCAACACATATGCAGCTGGTCAGAGATGGAAAGATGTAGCCAAGTTACAATACCTTATGAGGAATAAGGGC ATAAAGAAATCACCTGCTTTCAGCTGGATTGAGGTTAAAAACAAGGCACCTGCTTTTGTATCAGGAGATAAATCCCACCTGTGA
AA sequence Show only first row Show all	>Potri.001G186500.1 pacid=42792944 polypeptide=Potri.001G186500.1.p locus=Potri.001G186500 ID=Potri.001G186500.1.v4.1 annot-version=v4.1 MTAQTIFRTLLDRPNIISSKYQAKQLHAQILKLEPSSPIHLSRLISIYSNFNLLHESLLLFNALHSPPVLAYKSIIRCYVANGLLVQSVALFLQMRASGK KPDHHVFPSLLKSCALLSDLKLGESIHGCIIRLGMDFDLYTCNALMNMYGKFQKVFAAMDSFSIKFRIESAHDQNVTLDQTSYIFPKTNANSTILDQCYR KRNCSYMVEVNRRGSIMDSVKKVFEKMLKRDVVSWNTVIAGNAENGKYEEALMLVREMGNDNLKPDSFTLSSVLPIFAEYVDLHKGKEIHGYAMRHGFDN DVFIGSSLVGMYAKCARVEDALQVFNILPQRDSISWNSIIAGCVQNGLFDEGLRFFHQMLKAKVKPVPVSFSSIMPACANLIALHLGKQLHGFIIRVGYD DNMFVSSSLVDMYAKCGYIKVARWIFDRMDVHDMVSWTAIIMGYALHGQACHAVSLFEQMEMEGVRPNYVAFVAVLTACSHAGMMNEAWRYFNSMTQNYG IVPGLEHYACMADLLGRAGKLDEAFELISSMHRPVEGIWLSLLSACRVHKNVDLAEKVAEKIFEVDPENTGAYILLSNTYAAGQRWKDVAKLQYLMRNKG IKKSPAFSWIEVKNKAPAFVSGDKSHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	0	1
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	1.41	0.9114
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	3.87	0.8936
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	5.29	0.8989
AT2G31340		EMB1381	embryo defective 1381 (.1)		Potri.002G224300 [exp]	5.29	0.8748
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	5.47	0.8911
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	6.00	0.8923
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	7.07	0.8841
AT5G66500			Tetratricopeptide repeat (TPR)...		Potri.007G022500 [exp]	7.21	0.8750
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	7.93	0.8846
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	8.12	0.8827

Compare expression of checked genes

Potri.001G186500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.