Plant FIBer expression Database

Potri.001G186600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16230 478 / 7e-167 Predicted eukaryotic LigT (.1.2.3)
AT3G16220 248 / 2e-79 Predicted eukaryotic LigT (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037578
[exp]
446 / 1e-153 AT3G16230 426 / 4e-146 Predicted eukaryotic LigT (.1.2.3)
Lus10006828
[exp]
90 / 1e-29 AT3G16230 129 / 4e-33 Predicted eukaryotic LigT (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0007 KH PF00013 KH_1 KH domain
CL0247 2H PF10469 AKAP7_NLS AKAP7 2'5' RNA ligase-like domain
Representative CDS sequence
>Potri.001G186600.6 pacid=42792288 polypeptide=Potri.001G186600.6.p locus=Potri.001G186600 ID=Potri.001G186600.6.v4.1 annot-version=v4.1
ATGATTGCTTGCAGCAGCAGGTCTCTCTTCTTCGGAGTTGATTGCGCTCTCAAATACGCGAATCCATTTCTGAAATCGAATCCACTTACTTACTTTGAGA
GGATTAGTGGCGTTGCGAAGGAGGATACTAGGATGGATAGGAACAAGAAGCTTAAATCAGCAGGTGGTATTCGCCAATGCCAATGGAGACCGGTCTCTGT
CTCTAACATTCAAGAATCCACGGCCGAAGATTCTGTTAATGAGTTAGAAGATGGAGATCATGTTCAAGAAACGATAAAGGTTGCTCAAGTGGTGACTAAT
AATTGTGATTCAACCATCAGTGCTGGTGTGCTGAATGATACTGTCAAGCCCATGCTTTCTGCTGAAAAGCATTCACTTATGCTTGAGGTGGGTGCCTCTC
TTATTCGATTCATCAAAGGAAAAGAAGGATCCACTCAAAAAAAGATTGAAGAAGAGATGGGAGTTAAAATTGTTTTTCCGTCATCAAAGAAGGAAGAATC
TATTGTCATTGAAGGCATTTCAACTGATTGTGTGACAAGAGCTTCTAAAAAGATACAAGCTATTATGGATGAGGCGATTGAATCAAGTCTCGACTACTCT
CACTTTATATCTCTTCCATTGGCAATATACCCTGAATTGACTGATAAGCTAGTCAATTTTCAGAATTCCATACTGGGAACTAATGATGTTTCTGCAGATG
AAAATTTGGAAAGTGATTCTATTGAAGATACTTTGGACATAAAAAATAAGGGTCAGGAACTAATTAAAGGACGTGATGTAGCTGTTGAACTCAAAGTTGA
AGATGAAAAACATGTTAAAGTGGATTTAACTAGCATTCCTTTTGTTAGTTATCCTCCTAAACCACCAAGGTTGCCTAATGCTTCTGACTTTGGAATAGAC
AAATCCATATTTATTAAACCTACAACGTTTCACTTGACTGTACTCATGTTGAAGTTGTGGAACAAGGAGCGAGTCAATGCAGCTTCAGGTGTCCTAAAGA
GTATCTCATCAAAAGTGATTGATGCCTTGGATAATCGACCTATCTCTATCAGGCTTAAAGGGCTGGATACCATGAGAGGGTCTTTGTCCAAAGCTCGTGT
TCTCTATGCTCCGGTTGAAGAAATTGGGAGTGAGGGCCGACTTTTAAGTGCATGTCAAGTTATCATCAATGCATTTGTTGAGGCTGGACTTGTTCTAGAG
AAAGATGCTAAGCAAAAGTTAAAGTTGCATGCCACAGTGATGAACGCAAGGCACAGGAAAGGGAAGAGACGAAGAAAGAATGATTCCTTTGACGCAAGGG
GCATTTTCAAGCAGTTTGGATCAGAGGATTGGGGGGAGTATCTTATCCGTGAAGCTCATCTTTCACAACGCTTTGTGTTTGATGAGAATGGATATTACCA
TTGCTGTGCTTCAATACCTTTTCCTGGAAAAGAAGAACGCCAGCAGACTGATTGA
AA sequence
>Potri.001G186600.6 pacid=42792288 polypeptide=Potri.001G186600.6.p locus=Potri.001G186600 ID=Potri.001G186600.6.v4.1 annot-version=v4.1
MIACSSRSLFFGVDCALKYANPFLKSNPLTYFERISGVAKEDTRMDRNKKLKSAGGIRQCQWRPVSVSNIQESTAEDSVNELEDGDHVQETIKVAQVVTN
NCDSTISAGVLNDTVKPMLSAEKHSLMLEVGASLIRFIKGKEGSTQKKIEEEMGVKIVFPSSKKEESIVIEGISTDCVTRASKKIQAIMDEAIESSLDYS
HFISLPLAIYPELTDKLVNFQNSILGTNDVSADENLESDSIEDTLDIKNKGQELIKGRDVAVELKVEDEKHVKVDLTSIPFVSYPPKPPRLPNASDFGID
KSIFIKPTTFHLTVLMLKLWNKERVNAASGVLKSISSKVIDALDNRPISIRLKGLDTMRGSLSKARVLYAPVEEIGSEGRLLSACQVIINAFVEAGLVLE
KDAKQKLKLHATVMNARHRKGKRRRKNDSFDARGIFKQFGSEDWGEYLIREAHLSQRFVFDENGYYHCCASIPFPGKEERQQTD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G16230 Predicted eukaryotic LigT (.1.... Potri.001G186600
[exp]
0 1
AT1G15390 PDF1A, ATDEF1 peptide deformylase 1A (.1) Potri.001G171800
[exp]
1.73 0.8347 PDF1.2
AT4G18460 D-Tyr-tRNA(Tyr) deacylase fami... Potri.011G062200
[exp]
2.44 0.8028
AT1G63770 Peptidase M1 family protein (.... Potri.003G129500
[exp]
2.82 0.7804
AT1G77490 TAPX thylakoidal ascorbate peroxida... Potri.005G179200
[exp]
10.19 0.7231
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.007G109400
[exp]
10.39 0.7076
AT2G03620 AtMRS2-5, AtMGT... magnesium transporter 3 (.1.2) Potri.010G158100
[exp]
11.66 0.7180
AT1G08110 lactoylglutathione lyase famil... Potri.009G007200
[exp]
12.00 0.7181
AT4G22720 Actin-like ATPase superfamily ... Potri.007G129400
[exp]
13.07 0.6767
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.003G137500
[exp]
14.07 0.7234
AT1G34380 5'-3' exonuclease family prote... Potri.013G114400
[exp]
14.49 0.7401

Potri.001G186600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.