Plant FIBer expression Database

Potri.001G186900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16260 1147 / 0 TRZ4 tRNAse Z4 (.1)
AT1G52160 1068 / 0 TRZ3 tRNAse Z3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038290
[exp]
1219 / 0 AT3G16260 1122 / 0.0 tRNAse Z4 (.1)
Lus10025810
[exp]
1196 / 0 AT3G16260 1076 / 0.0 tRNAse Z4 (.1)
Lus10038291
[exp]
237 / 3e-71 AT3G16260 215 / 6e-64 tRNAse Z4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0381 Metallo-HOrase PF12706 Lactamase_B_2 Beta-lactamase superfamily domain
CL0381 Metallo-HOrase PF13691 Lactamase_B_4 tRNase Z endonuclease
Representative CDS sequence
>Potri.001G186900.1 pacid=42792718 polypeptide=Potri.001G186900.1.p locus=Potri.001G186900 ID=Potri.001G186900.1.v4.1 annot-version=v4.1
ATGTCCCACATCTCAAATCTGCGCCTCCTCCTCTCCCCTCTAAATCCCACTCTCCGTTTCCCCTTCTCTTCTAAACACAGACCTTATTCTCTACTCACCA
TCCTCTCTTCTTCTTCTCCTTATCCAAAACGACGACACCGTACCACGCCAAACCACCCGTCTCTTAATTTCAGAAGCAGAAGCAAAACTACGTCTAGAGA
GACCAGAGATAGAGACAAAGGGCAGTCAATGGACGAGAGTGGCAAGGAGAATTTTGGGTTTAATAAAAAAAGGGCTGAGGGTAGAGATAATCCTAAAAGG
AATTTACAGTTGAAAGTCAGAAAGCTCAATCCTATCAATACTATTTCTTATGTGCAGATTCTTGGGACTGGAATGGACACTCAGGATACTTCACCTTCTG
TCCTGCTCTTCTTTGACAAGCAAAGGTTTATTTTTAATGCTGGAGAGGGATTGCAACGATTCTGCACGGAGCATAAGATTAAACTATCGAAGATAGATCA
CATATTTCTCTCTCGTGTCTGCTCAGAAACAGCTGGTGGAATTCCAGGTTTGCTGTTAACTTTGGCTGGCATGGGAGAAGAAGGAATGTCAGTTAACATA
TGGGGTCCATCAGATCTCAAGTATTTGGTTGATGCAATGAAGTCTTTCATTCCCCATGCTGCCATGGTTCACACAAAGAGCTTTGGTTCCGATAATGTTG
GTCTGGTAGATGCAAATAAGTTTATAGACCCCATTGTTCTTATTAATGATGAGGTTGTCAAAATATCAGCTATTCTCTTACGACCAAGCCAGTCACAAGG
ATCTGCTCTAAAGCCTGGAGATATGTCTGTGATATATCTTTGTGAGTTGCGAGAGATTATGGGCAAATTTGACCCAGAAAAAGCTAAAGCTCTTGGTCTG
AAACCTGGGCCGAAATATAGGGAATTGCAATCAGGAAGATCAGTGATGTCCGACCTCCAAAGTATAATGGTTCATCCTAGTGATGTGATGGACCCTTCTG
TTCCTGGTCCCATTGTATTACTTGTTGACTGCCCTACAGAATCTCATGTGCAGGAATTGTTATCTATGGAATCTCTCAACAATTACTATGTGGATTTCTC
AGGTAACCCAACACAAAGTGGTAAGACTGTGAATTGCATCATTCATCTAAGTCCTGCTTCTGTAACAAGCAGCCCCACTTATCAGAAGTGGATGAAGAAA
TTTGGTTCAGCCCAGCACATTATGGCAGGACATGAAATGAAGAATGTGGAAATTCCTATTCTAAAATCCAGTGCAAGAATTGCAGCACGACTTAATTACT
TGTGTCCTCAGTTCTTTCCAGCTCCCGGATTTTGGTCGCTCACACATCTTAACAACTCAAGACCAGACTCAATTCTTTCAGGCGAGGGTTGTGTCTCAAA
GTTGTGTGAAAACACATCAGCTGAGAATCTTCTTAAGTTCACTTTGCGTCCTCATGCTCATCTTGGCTTCGACAAATCTAATATTCCAAGTTTGATGGCT
CCCTCAGAAATTATCAATGAGTTGCTCACTGAGATTCCAGAGATTGTGGATGCTGCCAAACATGTGCGCAAGTTTTGGAGTGGACCTGGAGGATTGGAAG
CAGACATAAATGCTATCCAGGGTAATAAGGTCTTTACTGAAGAGCCATGGTTGGAAGAGAATACTCTTCCTAGTTGCTTGGAAAATATAAGGAGAGATGA
CCTGGAGGTGGTCCTTTTGGGGACGGGATCATCTCAGCCTTCTAAATACCGAAATGTTACTTCTATCTATATTAATCTCTTCTCCAAAGGAAGTTTGCTC
CTAGATTGCGGGGAAGGAACCCTGGGACAACTAAAAAGAAGGTATGGTGTGGAGGGTGCTGATAATGCCGTGAGAAATTTAAGATGCATTTGGATTTCTC
ATATTCATGCAGATCACCATACTGGATTAGCAAGAATACTTGCTCTGCGACGAGACTTGTTAAAAGGCATGACCCATGAACCTGTACTTGTTGTGGGGCC
TTGGCAGCTCAAGAAATTTCTAGATGCATATCAAAGACTAGAAGACCTGGATATGCAGTTTATTGATTGTAGGAGTACCACTGAAGCTTCATGGGTTGCT
TTTGAGGATGATAGCGAATCAAAAAAGGATGACCTGTCTCTAGGAAGTCCAAATAATTTTGCAGAGATGAAAAATCCTACTCTAAATACTGAGTCAAATT
TGTTTGCCAGAGGAAACCGAATGCAGAGTTATTGGAAGAGACCTGGCAGTCCAGTTGATAATGGCATGGTTTTTCCAAGTCTAAAGAGATTGAAGGAGGT
GCTCAGTGAAGCAGGGCTGGAGGCTTTGATTAGTTTTCCTGTTGTTCACTGCCCTCAGGCATTTGGTATTGCCTTGAAGGCTGCGGAGAGAATCAACACC
GTCGGAAAAGTGATACCAGGTTGGAAGATTGTGTACTCAGGTGATACTAGGCCTTGTCCAGAACTGGTAGAAGCATCTCGTGGAGCAACCATTCTCATAC
ACGAGGCAACTTTCGAGGATGCATTGGTGGAGGAAGCTATAGCCAGAAACCACAGCACAACAGAGGAAGCCATAGAAGTGGGAAACTCGGCTGGTGCATA
CCGCATCATCCTCACCCACTTCAGCCAAAGATATCCAAAAATTCCTGTATTTGATGAGACACATATGCATAAAACATGCATTGCTTTTGATATGATGAGT
GTAAACATAGCAGATTTACCTGTGCTTCCTAGAGTGCTTCCATACCTTAAAATGCTCTTTAGAAATGAGATGGTAGTGGATGAATCAGATGATGTTGTAG
ATGCTGCAAGTGCGGTTGCTAATTAG
AA sequence
>Potri.001G186900.1 pacid=42792718 polypeptide=Potri.001G186900.1.p locus=Potri.001G186900 ID=Potri.001G186900.1.v4.1 annot-version=v4.1
MSHISNLRLLLSPLNPTLRFPFSSKHRPYSLLTILSSSSPYPKRRHRTTPNHPSLNFRSRSKTTSRETRDRDKGQSMDESGKENFGFNKKRAEGRDNPKR
NLQLKVRKLNPINTISYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLSRVCSETAGGIPGLLLTLAGMGEEGMSVNI
WGPSDLKYLVDAMKSFIPHAAMVHTKSFGSDNVGLVDANKFIDPIVLINDEVVKISAILLRPSQSQGSALKPGDMSVIYLCELREIMGKFDPEKAKALGL
KPGPKYRELQSGRSVMSDLQSIMVHPSDVMDPSVPGPIVLLVDCPTESHVQELLSMESLNNYYVDFSGNPTQSGKTVNCIIHLSPASVTSSPTYQKWMKK
FGSAQHIMAGHEMKNVEIPILKSSARIAARLNYLCPQFFPAPGFWSLTHLNNSRPDSILSGEGCVSKLCENTSAENLLKFTLRPHAHLGFDKSNIPSLMA
PSEIINELLTEIPEIVDAAKHVRKFWSGPGGLEADINAIQGNKVFTEEPWLEENTLPSCLENIRRDDLEVVLLGTGSSQPSKYRNVTSIYINLFSKGSLL
LDCGEGTLGQLKRRYGVEGADNAVRNLRCIWISHIHADHHTGLARILALRRDLLKGMTHEPVLVVGPWQLKKFLDAYQRLEDLDMQFIDCRSTTEASWVA
FEDDSESKKDDLSLGSPNNFAEMKNPTLNTESNLFARGNRMQSYWKRPGSPVDNGMVFPSLKRLKEVLSEAGLEALISFPVVHCPQAFGIALKAAERINT
VGKVIPGWKIVYSGDTRPCPELVEASRGATILIHEATFEDALVEEAIARNHSTTEEAIEVGNSAGAYRIILTHFSQRYPKIPVFDETHMHKTCIAFDMMS
VNIADLPVLPRVLPYLKMLFRNEMVVDESDDVVDAASAVAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G16260 TRZ4 tRNAse Z4 (.1) Potri.001G186900
[exp]
0 1
AT5G62650 Tic22-like family protein (.1) Potri.004G072100
[exp]
4.58 0.9059
AT3G10690 GYRA DNA GYRASE A (.1) Potri.010G247000
[exp]
4.89 0.8777
AT3G06200 P-loop containing nucleoside t... Potri.008G200600
[exp]
9.11 0.9132
AT1G74040 IPMS2, MAML-3, ... SOPROPYLMALATE SYNTHASE 2, 2-i... Potri.005G083100
[exp]
10.95 0.8868
AT1G72040 P-loop containing nucleoside t... Potri.013G109400
[exp]
11.31 0.9051
AT2G30320 Pseudouridine synthase family ... Potri.013G154200
[exp]
11.61 0.9010
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.019G127000
[exp]
11.74 0.9084
AT1G55000 peptidoglycan-binding LysM dom... Potri.005G032100
[exp]
11.83 0.8968
AT1G65030 Transducin/WD40 repeat-like su... Potri.012G107400
[exp]
14.38 0.8944
AT1G64600 methyltransferases;copper ion ... Potri.001G086800
[exp]
14.83 0.8658

Potri.001G186900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.