Plant FIBer expression Database

Potri.001G187000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16270 792 / 0 ENTH/VHS family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025811
[exp]
777 / 0 AT3G16270 698 / 0.0 ENTH/VHS family protein (.1)
Lus10038289
[exp]
407 / 2e-133 AT3G16270 377 / 2e-122 ENTH/VHS family protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G187000.1 pacid=42787562 polypeptide=Potri.001G187000.1.p locus=Potri.001G187000 ID=Potri.001G187000.1.v4.1 annot-version=v4.1
ATGGATTCGAGCAGGAGAGCGGTGGAATCGTACTGGAGATCGAGGATGATCGATGGAGCAACATCTGATGAAGACAAAGTCACTCCTGTTTACAAATTGG
AAGAGATTTGTGAGCTCTTGAGGTCTTCTCATGTTACTATTGTCAAAGAGGTCTCCGACTTTATACTCAAGAGGCTTGACCACAAGAGTCCCGTTGTTAA
ACAAAAGGCGTTGAGATTGATAAAATATGCTGTGGGAAAGTCTGGTGGAGAGTTCAGAAGGGAAATGCAAAGACATTCTGCTGCTGTGCGTCAGTTGTTT
CATTACAAGGGTCAGATGGATTCTTTGAAGGGGGATGCCCTTAACAAAGCAGTGAGGGATACAGCTCATGAGACTATCTCTGCTATTTTTTCCGAGGAGA
ATGGTAAGCCAGCTGCTCCTGCTGAAAATCTTAACAAACGAATACAAGGTTTTGGGAATACGAATTTTGATATGCCATATGAAGATAAAAAATCGTTCCT
TACCGAGGTAGTTGGTCTTGGTAGTGCGTCTATCAAGCAGGGAATTACTAGCCTAACACAAAGTCATTCGTTAAGAAAGAATGATAATGGGAGCTACAAG
AGCCCAAATCTTCATCGGTCATTGACCATAGAAAATGACTCCTCGGATAGATATCAACCAGTTCAGTTGAACAATGAAGCTCAGGGTAGTTCTGGAGTTT
CTAAGAATGTGGCCACGGGACCTTGGGGCCACGACTCGAGAGTAATGAATGCAGAAACAAAAAAGGAGGACTCCAGCTCACGCTATACAGAGAGTAAGAC
TCGCGAGGAGAAGTTGTTAGAGACCATAGTGACATCTGGTGGTGTGCGGCTACAACCTACCCGTGATGCCATTCAAGCTTTTCTAGAGGAGGCAGCAAAG
TTGAATGTATTGGCTCTAAGTCATGCCCTTGAATCCAAGCTTCAATCTCCTGTGTGGCAGGCTCGCATGAAAGCTGTGTGCCTACTTGAGTCAATTCTGA
GGAGAAAGGATGATGAACAATTTTCAATTGTATATTCATATTTTAGCGAAAATAAAGATTCTGTTGTGAGATGTTCTGAATCTCCCCAAAACTCTCTCAG
GGAAAAGGCTAACAAGGTGCTAAGCCTTTTGGGTGGGGAATCACTTGGTAACATGGTAGGTAATTCAGTAAAGGCTGAGACAGCTCATGTCCAGATGCCT
GACTTAATGGACACTGGAGATTCAGATGATTTCTTTGGGACAGATGATTCTATAAAGAAGCAAAGTGAACAACATATAGTGAACCCTATGACATCAACAA
CCCCTTTAATTGATGATCTATTTGGAGATGGTGTTGGCACGGGTGTTAGTACCGGGGAGGAGCAGAAAAATGAAGATCCCTTTGCAGATGTTTCATTTCA
CACTAGTGAGGGTAGGGAGCATGGGGATGATCTCTTTTCTGGGATGACTTTTGATGATAAACCAGGTGCTGATGAGAACCATATGCCTGCCAATGAAAAT
GGACCCGAGCTATTTGATATCTTTGGGTCAAATTCTGAATTTTTGAAGGGGCAAGAAAATAGTGAAACAGGTGTTAGTGGCTTAATGGCGAGCATGTCCA
TTAATGATAATGTCTCGAAGCTGCAAGTAACCTCTCCGGCAGTGTTCTCAGAAAGTCTCTTCTCGGATTTAACCAGTAATCCAAGCCATCAGGTCACAAA
TGATGCTTTGAATGGCTCGCTTGGCTTGTCAGCGACTGGGATAAATGTAAACCCACTACATCCTTCCGGTACCGTGCCATATAATATGCATCCTGGCATA
ATGTTGAACCCAGCTTTTCATTCTCAGCCGATAAATTATGCTGCCATGGGGAATTTTCTTGCACAACAGCAATTTCTTGCAACAATGTCCAACATTCAAC
ATCTAAGTAACCTAAATGTGCAAAATGCTGGTGTTAGTCATGCTTCGGGGACTGATGGAGGTGGATATTCTTCTGCACTTCCTGACATATTCCAATCGAA
CTTCCCAAATCAGGCTCCTACTTCAACAATGAACAGCTCTAAAAAAGAAGATACCAGAGCATTTGATTTTATCTCAGACCATGTTGCAGCAGCACGTGAT
CCAAAGAGAGTGGCCTAG
AA sequence
>Potri.001G187000.1 pacid=42787562 polypeptide=Potri.001G187000.1.p locus=Potri.001G187000 ID=Potri.001G187000.1.v4.1 annot-version=v4.1
MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVTIVKEVSDFILKRLDHKSPVVKQKALRLIKYAVGKSGGEFRREMQRHSAAVRQLF
HYKGQMDSLKGDALNKAVRDTAHETISAIFSEENGKPAAPAENLNKRIQGFGNTNFDMPYEDKKSFLTEVVGLGSASIKQGITSLTQSHSLRKNDNGSYK
SPNLHRSLTIENDSSDRYQPVQLNNEAQGSSGVSKNVATGPWGHDSRVMNAETKKEDSSSRYTESKTREEKLLETIVTSGGVRLQPTRDAIQAFLEEAAK
LNVLALSHALESKLQSPVWQARMKAVCLLESILRRKDDEQFSIVYSYFSENKDSVVRCSESPQNSLREKANKVLSLLGGESLGNMVGNSVKAETAHVQMP
DLMDTGDSDDFFGTDDSIKKQSEQHIVNPMTSTTPLIDDLFGDGVGTGVSTGEEQKNEDPFADVSFHTSEGREHGDDLFSGMTFDDKPGADENHMPANEN
GPELFDIFGSNSEFLKGQENSETGVSGLMASMSINDNVSKLQVTSPAVFSESLFSDLTSNPSHQVTNDALNGSLGLSATGINVNPLHPSGTVPYNMHPGI
MLNPAFHSQPINYAAMGNFLAQQQFLATMSNIQHLSNLNVQNAGVSHASGTDGGGYSSALPDIFQSNFPNQAPTSTMNSSKKEDTRAFDFISDHVAAARD
PKRVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G16270 ENTH/VHS family protein (.1) Potri.001G187000
[exp]
0 1
AT5G22070 Core-2/I-branching beta-1,6-N-... Potri.001G215400
[exp]
1.41 0.8060
AT5G10790 UBP22 ubiquitin-specific protease 22... Potri.018G123200
[exp]
3.16 0.6990
AT2G26920 Ubiquitin-associated/translati... Potri.001G225200
[exp]
3.74 0.6805
AT5G05380 PRA1.B3 prenylated RAB acceptor 1.B3 (... Potri.019G124100
[exp]
4.00 0.7589
AT5G14540 Protein of unknown function (D... Potri.001G348500
[exp]
6.00 0.7460
AT5G64560 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) Potri.008G161400
[exp]
7.93 0.6747
AT4G35510 unknown protein Potri.007G063000
[exp]
10.67 0.6927
AT4G02350 SEC15B exocyst complex component sec1... Potri.014G127400
[exp]
11.31 0.6299
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Potri.019G068700
[exp]
13.41 0.6247
AT2G28880 ADCS, EMB1997 embryo defective 1997, aminode... Potri.010G221500
[exp]
14.42 0.6765 PABAS

Potri.001G187000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.