Plant FIBer expression Database

Potri.001G187100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06220 145 / 1e-35 LETM1-like protein (.1.2)
AT3G11560 134 / 1e-32 LETM1-like protein (.1.2.3.4)
AT1G65540 61 / 2e-09 LETM1-like protein (.1)
AT3G59820 59 / 1e-08 LETM1-like protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G074900
[exp]
169 / 1e-43 AT3G11560 1033 / 0.0 LETM1-like protein (.1.2.3.4)
Potri.006G208300
[exp]
158 / 7e-40 AT3G11560 1056 / 0.0 LETM1-like protein (.1.2.3.4)
Potri.010G178400
[exp]
59 / 8e-09 AT1G65540 889 / 0.0 LETM1-like protein (.1)
Potri.008G078600
[exp]
57 / 3e-08 AT1G65540 915 / 0.0 LETM1-like protein (.1)
Potri.007G142000
[exp]
57 / 5e-08 AT3G59820 840 / 0.0 LETM1-like protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038268
[exp]
752 / 0 AT3G11560 147 / 4e-37 LETM1-like protein (.1.2.3.4)
Lus10025835
[exp]
733 / 0 AT1G52155 353 / 2e-114 unknown protein
Lus10021329
[exp]
155 / 7e-39 AT3G11560 976 / 0.0 LETM1-like protein (.1.2.3.4)
Lus10017005
[exp]
148 / 1e-36 AT3G11560 975 / 0.0 LETM1-like protein (.1.2.3.4)
Lus10029426
[exp]
83 / 3e-16 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
Lus10025602
[exp]
60 / 5e-09 AT3G59820 917 / 0.0 LETM1-like protein (.1.2)
Lus10027069
[exp]
60 / 5e-09 AT3G59820 917 / 0.0 LETM1-like protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07766 LETM1 LETM1-like protein
Representative CDS sequence
>Potri.001G187100.3 pacid=42788743 polypeptide=Potri.001G187100.3.p locus=Potri.001G187100 ID=Potri.001G187100.3.v4.1 annot-version=v4.1
ATGGCTTGCCATTGGTCTCTGCAACTTAACAACTCATTCTACTTCTCGAAGTCTTCTGGATCAAAATGCAAAAGAAGGATCAAGGCTGATGCTCCAAACT
TTTCAAAATTTAATGGGATGGAACATGGGGTTTCTTTCTTTTCGAAGAATAGCATTTCACTTGGATTTGTGTTTGCACGTTATACTTCCCGGTACATTTC
TTTGAAGGTGTTATCTTCCATGTCTTCTTCTGCTTCTACTGGAGAAATTAATGACGTGAATGAGGCTGTTGTGAGTAGACCTGATGATAAAAACATGGAG
TTAACTCGAATAAATTGTCTTGTGTGGGTACTGCATGAGTCTGCAACAAGCTTTTCCCAAGCAGTTGAGTCCCTTGAACTGGCAGGAAGTGGTCCAGAAC
TTGCAATGGCATGGAATGGGAAGGATGTCCATATATGGCATAAACGTTTGGCATATCAGGTAGCTGTTTATGCTTTGCTGAAAACGGCAATTGAAGTAGA
GATTTTGCTTTCTCATGATCGTCACAACCCATCTCCAGTTAAAGAAATGTCCAGCTTTACCCCGAAGATAAACTTGCTAGGCGAGTACATAGAAAACCAA
TTGAACATGAAGCATCCAGAATTAGTACAGTGGTTTAAAGTGGTGGAATTGCCTCATATAGCAGGATTTTTTGCTCCTTCGCTGAAACAGTGGTCTGTAG
AATATGCTGGAAGTGGTGTTGCAGGGATTATTGTAGCAATAAGCTGCTGTGCGGCTGTTGGAAAATTGGGCAGTGAAAGAATTTGCTGTCCATTATTCAC
GTTGTCACTAGAGGATGTATTAATAGAGCTCATGGATCTTTCACATAGTATTGTTGAAGTGGACAAATTACACAAACTAGCAACCGAGGCAGGATTTGAA
CTTGATTTCTTGTCCCATTTTGGTGCAAAGGTTTTCCCGTGCAATAAAACTGAAGAACTAGAGCTCTGGATTGGGTTGGCGCAGCAAAAACTTTCATTGG
CACTCAGCAAAGAAATTGATTTAAGAGGCACAGGAAAGAGGGCTCGTGCAGATAGTTTGGCCACTCTGGGGCTTTTTGCATATCTGGGAAGAAAGACTAG
ATTATTCTTGTCAAGAATGGGCATTAAGGATCTTGATGAGCTTGTTCTGGACTTCCTCAGTTATTTGGAGTGTGGCTGCCTTTTTGTTTACCCTGAACTT
GCTTCTGTGTCAACATATCAATGTTTCATGGAGGTCGTAAGTGATGAAATAGGATGGCTTGATTTTTATGCTGCATGCTCTTTTTTAAGCAATCAAGAAA
GGGAAAGGTCCAAACAGCACACAATTCAAGCAGAGAAAGAGATAATTCTATCTACTGTATTTACTGTTTGTTATGATGTTTTCTCTGGTTTTGCTCACTT
CAGCCGTTCAGCTCAACAGCCCTTAGATGCAGAATTGCTAGCTTTCTTGCTCCGAAGTCAAAGTCTGTTAACTATCTGTCTGGAAGACTACTGGGCAGTT
TATGATAGATCTTGTGAACCACTAAAGATTGTAGAAGCAGGTGCCTCTGACCACATGCTACCTGTAGGAACAAAGGGAAATGAGAATTTATATGTGACAT
TAGAAGCGCAACAGAGACCAGCTGAGTTAATACTAAAGGGATGCCTGACAACAAAATCTCTACAAAGCATTAACCTGAGAAAGGCTAGTTGCTCTGCCCA
GAGAGAAGCAATAACTCATGTGGAAGCCTCCAGCACCACCGCCACCAGACCAAATCTTCCACATGAGAGCTTACTCAGAAAATACAGTGTCAAATTGGTA
TCTACAAGCTCGGATCTGTGGATGGGAACCCAATTGCTTGTTGTAGACATCAGTTGTGCTCTGAAGCTACTCTTAAAGCAATTTCATGGCCACGAAGTTA
CAATAAGAGAAAGAAAGAAGTTAAAGAGAACGCTAAATGACATTATAACACTAATCCCAGTTACAATACTAATGCTGCTTCCTGTGTCTGCTGTAGGTCA
TGCAGCTATTCTAGCAGCCATCAAGAAATATATGCCGTTCTTGATCCCTTCTTCATACTCCGCTGAGCGACTTGAGGTTGTGAAACAACTAGATAGAACC
AAGAAGATGGAAGTTCAGTCATGGATCAACCTTGAAGATCCATCCTCTAGAATACCATGA
AA sequence
>Potri.001G187100.3 pacid=42788743 polypeptide=Potri.001G187100.3.p locus=Potri.001G187100 ID=Potri.001G187100.3.v4.1 annot-version=v4.1
MACHWSLQLNNSFYFSKSSGSKCKRRIKADAPNFSKFNGMEHGVSFFSKNSISLGFVFARYTSRYISLKVLSSMSSSASTGEINDVNEAVVSRPDDKNME
LTRINCLVWVLHESATSFSQAVESLELAGSGPELAMAWNGKDVHIWHKRLAYQVAVYALLKTAIEVEILLSHDRHNPSPVKEMSSFTPKINLLGEYIENQ
LNMKHPELVQWFKVVELPHIAGFFAPSLKQWSVEYAGSGVAGIIVAISCCAAVGKLGSERICCPLFTLSLEDVLIELMDLSHSIVEVDKLHKLATEAGFE
LDFLSHFGAKVFPCNKTEELELWIGLAQQKLSLALSKEIDLRGTGKRARADSLATLGLFAYLGRKTRLFLSRMGIKDLDELVLDFLSYLECGCLFVYPEL
ASVSTYQCFMEVVSDEIGWLDFYAACSFLSNQERERSKQHTIQAEKEIILSTVFTVCYDVFSGFAHFSRSAQQPLDAELLAFLLRSQSLLTICLEDYWAV
YDRSCEPLKIVEAGASDHMLPVGTKGNENLYVTLEAQQRPAELILKGCLTTKSLQSINLRKASCSAQREAITHVEASSTTATRPNLPHESLLRKYSVKLV
STSSDLWMGTQLLVVDISCALKLLLKQFHGHEVTIRERKKLKRTLNDIITLIPVTILMLLPVSAVGHAAILAAIKKYMPFLIPSSYSAERLEVVKQLDRT
KKMEVQSWINLEDPSSRIP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06220 LETM1-like protein (.1.2) Potri.001G187100
[exp]
0 1
AT1G10417 unknown protein Potri.008G190600
[exp]
2.44 0.9154
AT1G71090 Auxin efflux carrier family pr... Potri.008G127700
[exp]
3.00 0.8720
AT5G09380 RNA polymerase III RPC4 (.1) Potri.006G143500
[exp]
4.47 0.8871
Potri.004G111750
[exp]
5.09 0.8591
AT2G01818 PLATZ transcription factor fam... Potri.010G103500
[exp]
5.83 0.8382
AT5G09380 RNA polymerase III RPC4 (.1) Potri.005G126700
[exp]
5.91 0.8810
AT1G71840 transducin family protein / WD... Potri.013G116900
[exp]
9.79 0.8907
AT4G14770 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000
[exp]
9.79 0.8810
AT1G79910 Regulator of Vps4 activity in ... Potri.003G054700
[exp]
12.64 0.8333
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.010G052150
[exp]
13.03 0.8655

Potri.001G187100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.