Plant FIBer expression Database

Potri.001G187300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G52155 468 / 4e-167 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038269
[exp]
389 / 8e-136 AT1G52155 437 / 3e-155 unknown protein
Lus10025835
[exp]
315 / 3e-100 AT1G52155 353 / 2e-114 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G187300.1 pacid=42792820 polypeptide=Potri.001G187300.1.p locus=Potri.001G187300 ID=Potri.001G187300.1.v4.1 annot-version=v4.1
ATGGAAAGAATCGGACCGTATCGGGTCGAACTGGACGAATCGTATCGGCCTCTCCCTGCAGTGTACCTGGCTTTACTCTTTATATGGTTTCTCTCCGCTT
GCTCCTGGACTTTCAATACCTATAAAAACCGCCACTTTTCGACGATCAATTTGCAGTGGACACTAGCATCTGTGCCATTGATTAAAGCTTTGCAACTCAC
ACTGTCATTCCTCTTCTGGTATTCTTGCTTTTATCATCAGATATGTTCTCTGTGGATGTCATTTGGGGTGTATGTAACTGGAGTGCTCTTTCAGACAGCT
TATTTTGTTTCCTTTATACTAATCTCTCATGGTTACTGCATCATGTATGAGCACCTTTCCATATCTGACCGCCGTACCACAGCTGCACTTGGATGTGTCT
ATTACCTAACTCTTGTAGGGTACAGAGCTTCTGTACCATACTTCACAGTCCTGCTGCTGCTGAATTATTTAATTTCATTCTCTATGATTTTCCGCCAAAT
ATCTCAAAATTTATCAGTATTACGAGAACAGTTAACTGTTGTTGAGGAAGAGGATGTTCAGGCGATGTATGATGCTGTGTATATGAAATATACTATGTTC
AAGAAATTTCAGGGTGCGATGCAGATTGTAGTTATGGCAGAAACTGTGATACACTTTAATGTGGATACTTCTTCTGTGAACTACTGGCTGCGCTTGTTAG
TCAGAGAATGGGCACAGTTCTGCATCTTTCTGTATATTGGGTGGACGTTTAGGTCTCAAGACCGGGCACCTCGTTTCTCTGTTATGCCAAAGTCTAAGGG
AGAGCTAATGGTGCCTCCCATTTATAGTATTGAAATGGATGCAGAGACTTTCAAGGAGTTTAGTTGTCGTGAATGGCACATTGGAGTGCCAACCTCTGCA
ACTTATGATAGAGGCTTGAGCGATCCCATTGTAGTAGTAGTTCAGCATCCGCATCCGCATAGGCTGCCTACAGGCACAACATCTTCTTGA
AA sequence
>Potri.001G187300.1 pacid=42792820 polypeptide=Potri.001G187300.1.p locus=Potri.001G187300 ID=Potri.001G187300.1.v4.1 annot-version=v4.1
MERIGPYRVELDESYRPLPAVYLALLFIWFLSACSWTFNTYKNRHFSTINLQWTLASVPLIKALQLTLSFLFWYSCFYHQICSLWMSFGVYVTGVLFQTA
YFVSFILISHGYCIMYEHLSISDRRTTAALGCVYYLTLVGYRASVPYFTVLLLLNYLISFSMIFRQISQNLSVLREQLTVVEEEDVQAMYDAVYMKYTMF
KKFQGAMQIVVMAETVIHFNVDTSSVNYWLRLLVREWAQFCIFLYIGWTFRSQDRAPRFSVMPKSKGELMVPPIYSIEMDAETFKEFSCREWHIGVPTSA
TYDRGLSDPIVVVVQHPHPHRLPTGTTSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G52155 unknown protein Potri.001G187300
[exp]
0 1
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Potri.011G162500
[exp]
10.72 0.8744 Pt-TUB4.1
AT5G15490 UGD3 UDP-glucose dehydrogenase 3, U... Potri.004G118600
[exp]
12.44 0.8976
AT2G16400 HD BLH7 BEL1-like homeodomain 7 (.1) Potri.002G031000
[exp]
13.74 0.8806
AT4G35880 Eukaryotic aspartyl protease f... Potri.007G063800
[exp]
19.13 0.8888
AT2G24230 Leucine-rich repeat protein ki... Potri.018G107400
[exp]
27.11 0.8587
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.018G138900
[exp]
36.00 0.8275
AT1G30450 HAP5, ATCCC1, C... HAPLESS 5, cation-chloride co-... Potri.011G090900
[exp]
37.88 0.8733
AT1G63430 Leucine-rich repeat protein ki... Potri.003G124800
[exp]
39.79 0.8709
AT5G45290 RING/U-box superfamily protein... Potri.003G106600
[exp]
40.39 0.8736
AT1G68200 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.010G118700
[exp]
43.74 0.8670

Potri.001G187300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.