Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50140 280 / 2e-86 Ankyrin repeat family protein (.1) AT5G54710 278 / 5e-85 Ankyrin repeat family protein (.1) AT2G24600 226 / 1e-65 Ankyrin repeat family protein (.1.2.3.4) AT1G10340 211 / 3e-60 Ankyrin repeat family protein (.1.2) AT1G34050 190 / 1e-52 Ankyrin repeat family protein (.1) AT5G54700 153 / 4e-40 Ankyrin repeat family protein (.1) AT5G02620 111 / 1e-25 ATANK1, ANK1 ankyrin-like1 (.1) AT5G60070 110 / 4e-25 ankyrin repeat family protein (.1) AT1G03670 99 / 3e-21 ankyrin repeat family protein (.1) AT1G05640 97 / 8e-21 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042200 [exp] 310 / 3e-97 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.006G214600 [exp] 120 / 1e-28 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 117 / 1e-27 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.011G133700 [exp] 112 / 2e-26 AT1G03670 185 / 8e-53 ankyrin repeat family protein (.1) Potri.017G006800 [exp] 114 / 4e-26 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 110 / 3e-25 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.013G133700 [exp] 110 / 5e-25 AT1G03670 197 / 1e-54 ankyrin repeat family protein (.1) Potri.011G133400 [exp] 108 / 2e-24 AT4G03500 251 / 3e-75 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 107 / 3e-24 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024844 [exp] 558 / 0 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10018757 [exp] 474 / 2e-160 AT1G34050 298 / 3e-93 Ankyrin repeat family protein (.1) Lus10024845 [exp] 231 / 4e-71 AT2G24600 193 / 5e-58 Ankyrin repeat family protein (.1.2.3.4) Lus10037894 [exp] 223 / 6e-64 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10038609 [exp] 208 / 5e-62 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10038608 [exp] 160 / 6e-44 AT1G10340 168 / 2e-47 Ankyrin repeat family protein (.1.2) Lus10025289 [exp] 109 / 8e-25 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 108 / 2e-24 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 104 / 4e-23 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10034256 [exp] 100 / 4e-22 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.001G187600.3 pacid=42790029 polypeptide=Potri.001G187600.3.p locus=Potri.001G187600 ID=Potri.001G187600.3.v4.1 annot-version=v4.1 ATGGATCCAGCACTTTACAGAGCAGTTTTACTCAATGATATTCATGCATTTATCAGTTTAGTTCGAAAAAATGAAGCAATTCTTGACCAAAGAACCAGTA CTGCCTCTAACACAGTGCTTCACCTTGCTTCAAGGCTTGGATTTGTTGACTTGGTGATGGAAATCATTAAGTTGCGGCCAAACATGGTACAAGCTGAGAA CAAGATGCTGGAGACTCCTCTGCATGAAGCCTGTCGCGAAGGAAAATCAAAGATTGTATTGCTGCTATTACAGACAGGTTCATGGGTGGCCAGCAATTTT AACATGGAAAATCAGTCTCCATTACTCATCGCTTGCAGTTATGGGCATCTCGAAGTAGTCAAGGTTTTGTTGAATCAGCCATTGTTTCTGAGGTTAGAAT ATGATAATCCTCATGGTCTGACATCTCTACATGTGGCTGCATCAAAAGGCCATACAGAAATAGTGAAGATGATATTACGAGCGTGCCCAAATATGGCTCA GAAGATTGACAGTGACGGATGTAATCCTCTGCACTACGCTTGTAAAAATGGTCACTTGGAGATAACAAAATTACTTCTAAGGCATGACTTGGACCTTACT CTGATATATAATAACAAGGGTTTCAAACCATTGCACTTGGCAGCAATTCATGGCAATGGCACAATCCTTGAAGAATTTCTGGCTATGGCTCCCACATCAT TTGATTGTCTCACAACCGATGGGGACAATGTATTTCATCTTCTCGTAAGATTCAATGCCCACAGTGCCTTCATGTGCTTGGAACATGTGTTCGGTGATAC CAAGCTATTCCAACAACCAGATCAATTTGGCAACACCATTCTGCACATTGCAATCTCCGGAGGACTCTATCATTTAGCAGGCAGTATCATCAATGAAAGA AAAGTGGACATCAATCATCAAAACAATAGAGGACATACAGCGCTTGACATCCTCAACCATGCTGGAAGCAGTTTAGAAATCCAGGATCTTAGAGACATGT TGAAGAAAGCTGGTGGAAAATTAGGTACTGGTCTTTCTTGGTCACAAAAATCTGAAAGCCCCAGAGATGCACTAGAGCGAGAATTTGACCTGCAGCTGCA GCTTGGTTGTGGATCTGAAAGACACCAACTTTCTCAAGCACATTCTGCGGAAAACACCCCAATCACAAAGAGCATGCCGGAATTAATCATGAGAACCGAT GCAAGAGGTGAACCTCTTCAGCTTCAAGTTAACAATAATAATGATCTATCTGAATCAGAATACTTGTCAGACGAAACAAAAGGCTCCTCACCTTACAGGC ATGAAAGCATAATACGCAGGAAAAAGCTAATGAAAGTTCACAAGCGCCATCATAGGAAGCAACACAAGGCATACACTGAGGCACTACAGAATGCAAGGAA CACACTCACAGTAGTCGCTATTATGATTGCTACGGTGACTTTTACAGCAGGCATCAATCCTCCAGGTGGTGTCTACCAGGAGGGGCCATTGAAAGGAAAA TCAACAGCAGGCAGGACATCAGCTTTTAAGGTTTTTTCAATCACCAACAACATTGCCTTGTTCACATCCTTATGCATTGTAATAGCTCTAGTTAGCATCA TCCCCTTCCAAAGAAAGCCGCTAATGAAGCTATTGGTGGTTGCTCACAAGGGCATGTGGGTGGCAGTGTCATTCATGGCTGCCGCTTACATTGCAGCAAT ATGGGTGATTATGCCAGAGAGTCATGGGAATGTTTGGACATTTGAGGCTCTAATTTCCATTTTCGCTGGTACTCTAGGATCAGCTTTCATTTATCTTGGG GTTAAGTTGGTTGGACACCATCTGAGGAAATCAAAGTGGAGGAAAGAGCAGGGTGGTGCTGGTAACAACAAATATGAAAACCATTCACTTTCTCGGAATT CTGATGTAGAGAGTGCCATAACTGATGGTTATCATACGTTTTGA
AA sequence Show only first row Show all	>Potri.001G187600.3 pacid=42790029 polypeptide=Potri.001G187600.3.p locus=Potri.001G187600 ID=Potri.001G187600.3.v4.1 annot-version=v4.1 MDPALYRAVLLNDIHAFISLVRKNEAILDQRTSTASNTVLHLASRLGFVDLVMEIIKLRPNMVQAENKMLETPLHEACREGKSKIVLLLLQTGSWVASNF NMENQSPLLIACSYGHLEVVKVLLNQPLFLRLEYDNPHGLTSLHVAASKGHTEIVKMILRACPNMAQKIDSDGCNPLHYACKNGHLEITKLLLRHDLDLT LIYNNKGFKPLHLAAIHGNGTILEEFLAMAPTSFDCLTTDGDNVFHLLVRFNAHSAFMCLEHVFGDTKLFQQPDQFGNTILHIAISGGLYHLAGSIINER KVDINHQNNRGHTALDILNHAGSSLEIQDLRDMLKKAGGKLGTGLSWSQKSESPRDALEREFDLQLQLGCGSERHQLSQAHSAENTPITKSMPELIMRTD ARGEPLQLQVNNNNDLSESEYLSDETKGSSPYRHESIIRRKKLMKVHKRHHRKQHKAYTEALQNARNTLTVVAIMIATVTFTAGINPPGGVYQEGPLKGK STAGRTSAFKVFSITNNIALFTSLCIVIALVSIIPFQRKPLMKLLVVAHKGMWVAVSFMAAAYIAAIWVIMPESHGNVWTFEALISIFAGTLGSAFIYLG VKLVGHHLRKSKWRKEQGGAGNNKYENHSLSRNSDVESAITDGYHTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50140			Ankyrin repeat family protein ...		Potri.001G187600 [exp]	0	1
AT5G27360		SFP2	Major facilitator superfamily ...		Potri.013G027800 [exp]	5.47	0.6075
AT1G51940			protein kinase family protein ...		Potri.001G190200 [exp]	10.48	0.5875
AT1G47670			Transmembrane amino acid trans...		Potri.004G181000 [exp]	17.83	0.6114
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.008G107001 [exp]	19.82	0.4995
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	21.30	0.6117
AT1G67420			Zn-dependent exopeptidases sup...		Potri.010G060500 [exp]	32.75	0.5714
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108701 [exp]	36.94	0.5865
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014318 [exp]	40.79	0.5928
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014304 [exp]	43.81	0.5900
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.013G043900 [exp]	43.86	0.5720

Compare expression of checked genes

Potri.001G187600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.