Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16300 130 / 5e-38 Uncharacterised protein family (UPF0497) (.1) AT1G79780 123 / 2e-35 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G050400 [exp] 319 / 6e-112 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025833 [exp] 186 / 3e-59 AT3G16300 153 / 1e-46 Uncharacterised protein family (UPF0497) (.1) Lus10038271 [exp] 184 / 8e-59 AT3G16300 158 / 2e-48 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.001G188000.1 pacid=42787566 polypeptide=Potri.001G188000.1.p locus=Potri.001G188000 ID=Potri.001G188000.1.v4.1 annot-version=v4.1 ATGATGATGAATGGGCAAAAAATGGCAGCAGCAGAGGTGGCAGTGCAGCTGCCTGAGTCAAAGATGGTGACTGAGAACATAGGGGGAGCGGCAGCTGCTA TGAGGCCTTTTGGCCGGAAAGCTGAAGTTATGAACGTGTTACTGAGGGTGTTGTGCATGGTAACATCTGTTGCAGCTCTGTCCTCCATGGTCACAGCCCA ACAGTCCAGTACCGTGTCGATCTATGGCTTCATGCTCCCTATTCAATCGAAGTGGTCCTTCTCTCACTCATTTGAATATGTGGTTGGAGTCTCTGCAGTT GTTGCAGCGCACTCATTGCTGCAACTGCTGATTAGCGTGTCAAGGTTGCTTAGAAAATCTCCGGTGATTCAATCAAGAAGTCATGCATGGCTTGTTTTTG CAGGAGATCAGGTATTTGCATATGCAATGATAAGCGCTGGGGCCGCTGCATCAGGAGTCACCAACCTCAATCGCACAGGAATCCGACACACAGCTTTGCC TAATTTCTGCAAGCCTCTACAGAGCTTCTGTGACCATGTTGCTGTCTCTATATTCTTCACTTTCTTGAGCTGCTTCTTGCTTGCTGCATCTGCTGTTCAG GAAGTCATATGGCTCTCCAGATCCAAGTACTGA
AA sequence Show only first row Show all	>Potri.001G188000.1 pacid=42787566 polypeptide=Potri.001G188000.1.p locus=Potri.001G188000 ID=Potri.001G188000.1.v4.1 annot-version=v4.1 MMMNGQKMAAAEVAVQLPESKMVTENIGGAAAAMRPFGRKAEVMNVLLRVLCMVTSVAALSSMVTAQQSSTVSIYGFMLPIQSKWSFSHSFEYVVGVSAV VAAHSLLQLLISVSRLLRKSPVIQSRSHAWLVFAGDQVFAYAMISAGAAASGVTNLNRTGIRHTALPNFCKPLQSFCDHVAVSIFFTFLSCFLLAASAVQ EVIWLSRSKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16300			Uncharacterised protein family...		Potri.001G188000 [exp]	0	1
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	4.89	0.7040
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	7.07	0.7186
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Potri.011G010500 [exp]	9.69	0.7266
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.001G095600 [exp]	14.42	0.6309
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	16.34	0.7184
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	16.94	0.7011
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Potri.006G239700 [exp]	16.97	0.6494	TIP4.1
AT3G46540			ENTH/VHS family protein (.1)		Potri.009G030500 [exp]	17.54	0.6867
AT5G57100			Nucleotide/sugar transporter f...		Potri.006G072500 [exp]	18.70	0.6854
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.017G029700 [exp]	19.59	0.7134

Compare expression of checked genes

Potri.001G188000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.