Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16310 468 / 3e-167 mitotic phosphoprotein N' end (MPPN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011431 [exp] 481 / 2e-172 AT3G16310 461 / 3e-164 mitotic phosphoprotein N' end (MPPN) family protein (.1) Lus10037573 [exp] 462 / 1e-164 AT3G16310 459 / 3e-163 mitotic phosphoprotein N' end (MPPN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF05172 [poplar] [flax] Nup35_RRM Nup53/35/40-type RNA recognition motif
Representative CDS sequence Show only first row Show all	>Potri.001G188300.1 pacid=42791118 polypeptide=Potri.001G188300.1.p locus=Potri.001G188300 ID=Potri.001G188300.1.v4.1 annot-version=v4.1 ATGAGTTTAGTGAATAAATCCTCTGGGAGGCAATCCTTGTTTTTCCAAGATTTGGCATCACCTGTTTCTGCTGGTAAAGGGAAGTTCTCGACTCCAGCTC AGGCTGCTGCTGTATCTGCTCTATGGCGTGACAATTTTGGGGGTTCCGATCTTCCTCCCCCTCCCTTTTACACCTTGGAGGACCGTTCGGAAATCTCTCC CGAGTCTGGGATTCCTGATTACCCTTTATCTCCTGACATCAAATCTCACCCTACAACATCTCCATTTCAGTCTTCTGGGAGGGAGTTTGGTACTCCCCCA AAAACCAAATCCGAGGCTACTACTTCCTTTGCTTTGATCAGTGGGCAGAACACTCAACAGGGTTCTCCGATTTCGACTTGGTGGTCACCATCAAAAGCTA GAAGCAGCGAACACGAAGACAAAGGTAAAGGTTCTCCAGTTGAGGGTGTCGTCCAACCTGGTGCTTTAATCACACTTCCACCGCCTCGAGAAGTTGCAAG ACCGGAGAAGCATAGGAACTGCGTGCCTGCGGGTAACCTTGACGAGGAAGAATGGGTTACTGTTTATGGATTTGCTCCGGGTGATACCAATTTAGTGTTA CGGGAGTTTGAAAAATGCGGTGTGATCTTGAAACATGTTCCTGGTCCAAGGGAAGCTAACTGGATGCACATTCTCTATCAGAGTCGAGCTGATGCTCAGA AGGCTCTTAGCAAGAATGGGATGCAAATCAACGGAGTACTAATCATTGGTGTGAAGCTAGTGGATCCAATGCAACGCCAGGCTTTGAACGAAAGAATTAA CAATCAGGGATTCATGACCTTACCCCCACCATCATCGACTAGAACCCCAGATTCAAACGCATTAAGAGCCTCTCCTCGCCCCCACTATCTTCAAAATGGC AGCACCAGTGCCCGGCAGTCAGGAGGTGTGATTGCTTCCCCAGCGAAGTCCATGGTATCCAAAATCTTTGATGTTATGTTTGGCATTTAG
AA sequence Show only first row Show all	>Potri.001G188300.1 pacid=42791118 polypeptide=Potri.001G188300.1.p locus=Potri.001G188300 ID=Potri.001G188300.1.v4.1 annot-version=v4.1 MSLVNKSSGRQSLFFQDLASPVSAGKGKFSTPAQAAAVSALWRDNFGGSDLPPPPFYTLEDRSEISPESGIPDYPLSPDIKSHPTTSPFQSSGREFGTPP KTKSEATTSFALISGQNTQQGSPISTWWSPSKARSSEHEDKGKGSPVEGVVQPGALITLPPPREVARPEKHRNCVPAGNLDEEEWVTVYGFAPGDTNLVL REFEKCGVILKHVPGPREANWMHILYQSRADAQKALSKNGMQINGVLIIGVKLVDPMQRQALNERINNQGFMTLPPPSSTRTPDSNALRASPRPHYLQNG STSARQSGGVIASPAKSMVSKIFDVMFGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16310			mitotic phosphoprotein N' end ...		Potri.001G188300 [exp]	0	1
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	3.16	0.8498
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.008G107100 [exp]	3.60	0.8118
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.018G002000 [exp]	3.87	0.8408
AT4G03120			C2H2 and C2HC zinc fingers sup...		Potri.003G058400 [exp]	4.89	0.8426
AT3G18760			Translation elongation factor...		Potri.018G113200 [exp]	8.36	0.8281
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Potri.003G194400 [exp]	8.48	0.7878
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	10.39	0.8184
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	12.00	0.8308
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.003G182100 [exp]	12.48	0.8132
AT1G07030			Mitochondrial substrate carrie...		Potri.001G282400 [exp]	12.64	0.8185

Compare expression of checked genes

Potri.001G188300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.