Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATHB.12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52150 1477 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1338 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT2G34710 1085 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 1064 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1054 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT4G00730 91 / 2e-18 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 89 / 9e-18 HD PDF2 protodermal factor 2 (.1) AT1G79840 86 / 4e-17 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT3G61150 85 / 1e-16 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G52170 81 / 1e-15 HD HDG7 homeodomain GLABROUS 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G050100 [exp] 1615 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.006G237500 [exp] 1474 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1458 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.001G372300 [exp] 1167 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1153 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 1095 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G211300 [exp] 1064 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.002G230200 [exp] 112 / 3e-25 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 111 / 5e-25 AT4G04890 1185 / 0.0 protodermal factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037568 [exp] 1462 / 0 AT1G52150 1441 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10011426 [exp] 1375 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10011616 [exp] 1249 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10000719 [exp] 1100 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10021470 [exp] 1098 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10023357 [exp] 1090 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1080 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10002037 [exp] 1019 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10006765 [exp] 113 / 1e-25 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 110 / 1e-24 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0183 [poplar] [flax] PAS_Fold PF08670 [poplar] [flax] MEKHLA MEKHLA domain
Representative CDS sequence Show only first row Show all	>Potri.001G188800.2 pacid=42790121 polypeptide=Potri.001G188800.2.p locus=Potri.001G188800 ID=Potri.001G188800.2.v4.1 annot-version=v4.1 ATGATGGCAATGTCCTGCAAGGATGGTAAGAATCCTATTAACATGGACAATGGCAAGTATGTCCGGTACACGCCTGAGCAGGTCGAAGCCCTGGAAAGGC TCTATCATGATTGCCCCAAACCCAGCTCCATTCGCCGCCAGCAGCTCATTAGGGAGTGCCCAATTCTCTCCAACATTGAGCCCAAACAAATCAAAGTTTG GTTCCAAAATAGAAGGTGCCGAGAGAAGCAAAGGAAAGAGGCGTCGCGCCTCCAAGCGGTGAATAGGAAGCTGACTGCAATGAACAAGCTTCTAATGGAG GAGAATGATAGGTTGCAGAAGCAGGTGTCGCAGCTTGTGTATGAGAATGGCTACTTTCGCCAGCATACCCAGAATACAACGCTTGCTTCCAAAGATACAA GCTGTGAATCAGTGGTGACGAGCGGTCAACACCACCTGACACCTCAGCATCCGCCAAGGGATGCTAGTCCTGCAGGGCTTTTGTCCATCGCAGAAGAGAC TTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATT TCTCATGGTTGTTCTGGTGTGGGAGCACGAGCCTGCGGCCTGGTGGGTCTTGAACCTACAAGGGTTGCAGAAATCCTCAAGGATCGGCCATCGTGGTTTC GTGATTGCCGAGCTGTGGATGTGCTGAATGTGCTGCCCACTGCTAATGGGGGAACGATTGAGCTGCTTTACATGCAGCTCTATGCGCCAACAACTTTGGC ACCGGGTCGTGACTTCTGGTTGTTGCGTTATACTTCTGTTTTAGAAGATGGAAGCCTTGTGGTATGTGAGAGATCTCTGAAAAATACTCAAAATGGCCCG AGCATGCCACCAGTGCAGCATTTTGTGAGAGCAGAAATGCTACCAAGTGGGTATCTGGTACGGCCTTGTGAAGGTGGTGGTTCAATCATACACATAGTTG ACCACATGGATTTGGAGCCTTGGAGTGTGCCTGAAGTGTTACGTCCGCTTTATGAATCCTCAACTGTACTCGCTCAAAAGACAACCATGGCGGCTCTACG CCAACTGAGGCAAATTGCTCAGGAAGCTTCTCAGTCTAGTGTGACCAACTGGGGCAGACGACCTGCAGCTTTACGAGCGTTGAGCCAGAGGTTGAGCAGG GGTTTTAATGAGGCTCTCAATGGATTTAGTGATGAGGGGTGGTCAATGATTGGAAATGACGGCATGGACGATGTTACTATCCTAGTGAACTCATCTCCTG ACAAGTTGATGGGTTTAAATCTTTCCTTCTCCAATGGGTTTCCAGCTGTCAGCAGTGCAGTCCTGTGCGCTAAAGCATCAATGCTTTTACAGAATGTCCC TCCTGCAATCCTTCTCAGGTTCTTGCGGGAGCACAGGTCAGAGTGGGCAGATAACAATATCGATGCCTATGCAGCCGCAGCGGTTAAAGTCGGTCCTTGC AGTTTACAAGGGTCTAGAGTTGGAAATTTTGGCGGTCAAGTTATACTTCCACTTGCTCACACCGTGGAGCACGAAGAGTTCCTGGAGGTCATAAAACTAG AAGGGGTTTGCCATTCTCCTGAAGATGCAATTATGCCCAGAGATGTGTTTCTTTTGCAACTCTGCTGTGGAATGGACGAGAATGCTGTTGGCACATGTGC TGAACTTATATTTGCTCCCATTGATGCTACTTTTGCTGATGACGCACCTCTTTTGCCTTCTGGTTTTCGCATCATTCCCCTTGATTCTGGGAAGGAAGCC TCCAGTCCAAATCGTACATTGGACCTCGCTTCTGCTCTTGAAGTTGGAGCTGGAAACAGAGCATCCAGTGATTTTTCTGCTAATTCTGGCTGCACAAGAT CTGTAATGACAATTGCATTTGAATTTGCATTTGAGAGCCACATGCAAGAGCATGTAGCATCAATGGCTCGGCAATATATCCGCAGCATTATATCTTCAGT TCAGAGGGTGGCTTTAGCACTATCTCCTTCTCATCAGGGTTCACAGGCTGGTCTTCGGTCACCACTGGGTACTCCTGAAGCACAGACACTTGCTCGTTGG ATCTGCCAGAGCTACCGGAACTATTTGGGTGTGGAGCTACTTAAATCCAGCAGTGAAGGAAGTGAATCTATTCTGAAAACCTTGTGGCATCATTCAGATG CGATCATGTGCTGCTCATTGAAGGCGCTGCCGGTCTTCACTTTTGCTAACCAAGCAGGACTTGACATGCTCGAGACAACCTTGGTCGCACTGCAAGACAT AACTTTGGAAAAGATATTTGATGATCATGGAAGGAAAACTCTCTGCTCAGAATTCCCTCAGATTATGCAACAGGGTTTTACTTGTCTACAAGGTGGTATC TGTTTGTCAAGCATGGGCAGACCAGTCTCATACGAGAGAGCGGTGTCCTGGAAAGTGTTGAATGAAGAAGAAAATGCGCATTGCATCTGCTTTATGTTTA TAAACTGGTCTTTTGTTTGA
AA sequence Show only first row Show all	>Potri.001G188800.2 pacid=42790121 polypeptide=Potri.001G188800.2.p locus=Potri.001G188800 ID=Potri.001G188800.2.v4.1 annot-version=v4.1 MMAMSCKDGKNPINMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLME ENDRLQKQVSQLVYENGYFRQHTQNTTLASKDTSCESVVTSGQHHLTPQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI SHGCSGVGARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPGRDFWLLRYTSVLEDGSLVVCERSLKNTQNGP SMPPVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQIAQEASQSSVTNWGRRPAALRALSQRLSR GFNEALNGFSDEGWSMIGNDGMDDVTILVNSSPDKLMGLNLSFSNGFPAVSSAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNIDAYAAAAVKVGPC SLQGSRVGNFGGQVILPLAHTVEHEEFLEVIKLEGVCHSPEDAIMPRDVFLLQLCCGMDENAVGTCAELIFAPIDATFADDAPLLPSGFRIIPLDSGKEA SSPNRTLDLASALEVGAGNRASSDFSANSGCTRSVMTIAFEFAFESHMQEHVASMARQYIRSIISSVQRVALALSPSHQGSQAGLRSPLGTPEAQTLARW ICQSYRNYLGVELLKSSSEGSESILKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFTCLQGGI CLSSMGRPVSYERAVSWKVLNEEENAHCICFMFINWSFV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.001G188800 [exp]	0	1	ATHB.12
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	1.41	0.9181	ATHB.11
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	2.00	0.9082
AT2G28310			Protein of unknown function (D...		Potri.009G011000 [exp]	2.23	0.9275
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	5.47	0.9064	Pt-CPK7.2,CPK14
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.017G059300 [exp]	5.91	0.8969	SHM4.2
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.014G075700 [exp]	6.00	0.9162
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.004G050150 [exp]	6.78	0.8686
AT5G01970			unknown protein		Potri.016G141300 [exp]	6.92	0.9034
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.003G205400 [exp]	7.07	0.8525
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	9.11	0.8373

Compare expression of checked genes

Potri.001G188800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.