Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15215 259 / 4e-87 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein AT3G18380 182 / 5e-56 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046200 [exp] 220 / 4e-72 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.011G097500 [exp] 186 / 1e-57 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.001G373300 [exp] 177 / 1e-53 AT3G18380 369 / 7e-127 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038276 [exp] 291 / 2e-99 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10025826 [exp] 247 / 6e-82 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10014151 [exp] 190 / 4e-59 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10017944 [exp] 181 / 9e-56 AT3G18380 418 / 7e-147 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10013684 [exp] 181 / 1e-55 AT3G18380 416 / 4e-146 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10005480 [exp] 123 / 1e-35 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10037564 [exp] 124 / 6e-35 AT1G15215 130 / 2e-37 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF16719 [poplar] [flax] SAWADEE SAWADEE domain
Representative CDS sequence Show only first row Show all	>Potri.001G189200.1 pacid=42788488 polypeptide=Potri.001G189200.1.p locus=Potri.001G189200 ID=Potri.001G189200.1.v4.1 annot-version=v4.1 ATGGATTTTGAATTCACACTTTCTGAGATGCTGGAAATGGAGAATATGTTCAAGGAATTAGAGGAGGGACCACTAGCTCCGCAGTTTTGTGAGAAGCTTG CAAGCAGCTTTAGTTTAGCGCCAAGTCGTGATGGAAAGCAAGCCATTACACCTCGACAGGTTAAAAGCTGGTTCCAGGATAGACTAAAGAAGTCACAACC TCGAGTTGCTTCTTCAAATATGGCTCTCAAATTATTCGCTGATCTCTCTGATGCAAGTGCTTCTTTTGGTGCAACTGAGAGTTCACAAAAGCTCAAAGGC AATGCCTCTGATCTTTCAGAGTTGATTTTTGAAGCTTTGTCCTCAAAAGATAATGCTTGGTATGATGTTGCTTCTTTCCTCAACTATAGAGTTGTTTGCT CTGGTGAACTTGAAGTGCGAGTAAGATTTGCTGGGTTTCGTAATACAGATGATGAGTGGGTGAATGTGAGAAGGGCAGTGCGGGAACGATCTATTCCTTT AGAATCTTCAGAATGTCAGAGGGTCAAAGTTGGTGATCTTGTGCTGTGCTTTCAGGAAAGAGAAGAACGAGCAGTATACTGTGATGCCCATATTGTAGAG ATCAACAGGAAATTACATGATATAAATGGTTGTAGATGCACCTTTGTAGTTCGTTATGATCATGACGACTTCGAGGAAGAAGTTCGGTTGGATAGGTTAT GTGGCAGACCAACGCCATAG
AA sequence Show only first row Show all	>Potri.001G189200.1 pacid=42788488 polypeptide=Potri.001G189200.1.p locus=Potri.001G189200 ID=Potri.001G189200.1.v4.1 annot-version=v4.1 MDFEFTLSEMLEMENMFKELEEGPLAPQFCEKLASSFSLAPSRDGKQAITPRQVKSWFQDRLKKSQPRVASSNMALKLFADLSDASASFGATESSQKLKG NASDLSELIFEALSSKDNAWYDVASFLNYRVVCSGELEVRVRFAGFRNTDDEWVNVRRAVRERSIPLESSECQRVKVGDLVLCFQEREERAVYCDAHIVE INRKLHDINGCRCTFVVRYDHDDFEEEVRLDRLCGRPTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.001G189200 [exp]	0	1
AT1G10095			Protein prenylyltransferase su...		Potri.013G047100 [exp]	1.00	0.7782
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.019G133500 [exp]	7.48	0.6661
AT5G63690			Nucleic acid-binding, OB-fold-...		Potri.014G083500 [exp]	15.00	0.6663
AT1G01760			adenosine deaminases;RNA bindi...		Potri.014G081400 [exp]	24.37	0.6441
AT1G80530			Major facilitator superfamily ...		Potri.003G016725 [exp]	24.73	0.6532
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.008G127400 [exp]	26.38	0.6414
AT2G23090			Uncharacterised protein family...		Potri.001G296600 [exp]	29.06	0.6619
AT1G58602			LRR and NB-ARC domains-contain...		Potri.011G031312 [exp]	31.63	0.6496
AT5G64010			unknown protein		Potri.005G064951 [exp]	31.85	0.6115
AT3G13440			S-adenosyl-L-methionine-depend...		Potri.003G157201 [exp]	37.04	0.5859

Compare expression of checked genes

Potri.001G189200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.