Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DTA4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79760 170 / 3e-50 DTA4 downstream target of AGL15-4 (.1) AT2G38500 96 / 8e-22 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19000 58 / 4e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G21200 53 / 2e-07 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G77330 52 / 3e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 51 / 6e-07 ATFLS1, FLS flavonol synthase 1 (.1.2) AT5G63600 51 / 6e-07 ATFLS5, FLS5 flavonol synthase 5 (.1.2) AT5G63595 49 / 3e-06 ATFLS4, FLS4 flavonol synthase 4 (.1) AT3G13610 49 / 4e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43935 48 / 5e-06 ATFLS6, FLS6 flavonol synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047800 [exp] 585 / 0 AT1G79760 103 / 1e-24 downstream target of AGL15-4 (.1) Potri.016G134500 [exp] 94 / 2e-21 AT2G38500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069800 [exp] 69 / 1e-12 AT3G11150 263 / 4e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G378400 [exp] 60 / 7e-10 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.010G201000 [exp] 60 / 9e-10 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 59 / 2e-09 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 59 / 3e-09 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 58 / 3e-09 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 58 / 3e-09 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025825 [exp] 365 / 9e-125 AT1G79760 176 / 9e-52 downstream target of AGL15-4 (.1) Lus10038277 [exp] 349 / 2e-118 AT1G79760 170 / 1e-49 downstream target of AGL15-4 (.1) Lus10006518 [exp] 61 / 7e-10 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023851 [exp] 56 / 3e-08 AT3G19000 474 / 9e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10000857 [exp] 55 / 3e-08 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011985 [exp] 51 / 8e-07 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10004808 [exp] 51 / 8e-07 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030567 [exp] 50 / 1e-06 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10020999 [exp] 50 / 1e-06 AT3G19000 473 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10012912 [exp] 50 / 1e-06 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G189400.1 pacid=42790046 polypeptide=Potri.001G189400.1.p locus=Potri.001G189400 ID=Potri.001G189400.1.v4.1 annot-version=v4.1 ATGGCTATTTCCCCTGAATCCATGCCAGAAAATCCCATTGATTTCCGAGCCCCGCCGCCCTCTCCTATCGCCTCTGGCCGAAGATCATCCGTGACCAATG ATGAAGTCCTAACTGAGTTTCTTGAGCACTCACTACGTGTTCCGGATTTGATTTTACCTGATAAGATATTTCCAAGACAGAAAATTGTCGAAACACCCCC AAGAATTGATTGTCAATCACTGATTTCTGGGGAAAGTGATTCAGTTCTGAGGATGCTGGATTCAATAGCAAGAATTGGGTGCTTTCAACTAGTTAACTTT GGAATTCCAAGTGAATTTATAAGGTTGGTGTCGGTCACAGCAGCCGGAATCTTTCAGCTGCCTCCCGAAAAGAAGGAGGCAGTCTCGAGGTCACTGGAGA GGCCGTATGGATTCGAGGAAGTTCATGGTGATCATCAGGAGGCCGAGAGTGAAGTAAGTGAAGAGTTTGTGTGGTGTAAAGATGAGAGTTTGAAGTTGGA TATGGAGGGAATATGGCCAACTGGATATTCAAATTTCAGCAAGAAAATGGAGACCCTTTCATCTGATATAGAGAAAGTGGCCAGGAAAATCCTCCAAATT CTCCATGAAAATTGTCCGAGGAAATCAATGTATGGAAATGATATGATGCAGAGGCAAGATCTCATTGGCTCAGTCTGTTGCCTATACAAGCATGGACGTA ACTTTCTGGCTGATCAATGGGCTAGCTCCTTGGGATATGATGTGATGAGAATGCTAATAAGGGGAACTGATTACTCTCATGCCTTGTGCTTGCATGTATG TGATGGTTCATCAGAATTTCATGTTTACTCCAAGAAAGGCTGGGTGTCTTTCTGCCCAGATAAAGATGCATTGATTGTCACAGTTGGAGATCGAACACAG GTTTGGAGTGGCGGCCAGTACAAGCATGTTTTCGGATGGCCAATCTTTAAAGGTGAGGATAAGGACAGCATTTCAATGGCTTTTCTCTATTCTCCTCCAA GCAGCAATAGTAGCAGCTCCAAAACCAGCAAGGGGAAGACTGTTTCGCTTGGCCAACAAGCTATTTTGGCTATAATTTTGACTCTTGTATGCCATTTCTT AGTTTATTTTTATAAGGAAGTTTGA
AA sequence Show only first row Show all	>Potri.001G189400.1 pacid=42790046 polypeptide=Potri.001G189400.1.p locus=Potri.001G189400 ID=Potri.001G189400.1.v4.1 annot-version=v4.1 MAISPESMPENPIDFRAPPPSPIASGRRSSVTNDEVLTEFLEHSLRVPDLILPDKIFPRQKIVETPPRIDCQSLISGESDSVLRMLDSIARIGCFQLVNF GIPSEFIRLVSVTAAGIFQLPPEKKEAVSRSLERPYGFEEVHGDHQEAESEVSEEFVWCKDESLKLDMEGIWPTGYSNFSKKMETLSSDIEKVARKILQI LHENCPRKSMYGNDMMQRQDLIGSVCCLYKHGRNFLADQWASSLGYDVMRMLIRGTDYSHALCLHVCDGSSEFHVYSKKGWVSFCPDKDALIVTVGDRTQ VWSGGQYKHVFGWPIFKGEDKDSISMAFLYSPPSSNSSSSKTSKGKTVSLGQQAILAIILTLVCHFLVYFYKEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.001G189400 [exp]	0	1	DTA4.1
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	1.00	0.9621
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.010G031500 [exp]	1.41	0.9259	Pt-NHX1.1
AT4G22860			Cell cycle regulated microtubu...		Potri.012G130300 [exp]	4.47	0.8732
AT3G59680			unknown protein		Potri.019G112300 [exp]	5.29	0.8805
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.005G141900 [exp]	6.92	0.8933	CYCD3.4
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145600 [exp]	7.74	0.8610
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	7.93	0.9002
AT3G17365			S-adenosyl-L-methionine-depend...		Potri.010G153200 [exp]	8.36	0.8920
AT1G21090			Cupredoxin superfamily protein...		Potri.002G067600 [exp]	8.48	0.8928
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Potri.006G116200 [exp]	9.21	0.8766

Compare expression of checked genes

Potri.001G189400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.