Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79750 951 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G25880 912 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT5G11670 891 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT2G19900 881 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT2G13560 396 / 6e-130 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 387 / 2e-126 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G049300 [exp] 1092 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G046600 [exp] 934 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 934 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.006G236500 [exp] 928 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.002G135300 [exp] 389 / 3e-127 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 387 / 1e-126 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 385 / 5e-126 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G043700 [exp] 376 / 3e-122 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025823 [exp] 969 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 907 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10037561 [exp] 901 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10043025 [exp] 878 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 871 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10011125 [exp] 868 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005484 [exp] 826 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005483 [exp] 764 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10034963 [exp] 673 / 0 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10006036 [exp] 649 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [poplar] [flax] AA_dh_N PF00390 [poplar] [flax] malic Malic enzyme, N-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF03949 [poplar] [flax] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G189700.5 pacid=42791424 polypeptide=Potri.001G189700.5.p locus=Potri.001G189700 ID=Potri.001G189700.5.v4.1 annot-version=v4.1 ATGATGTCCTTGAATAGAAGCATCTTTCTGAGTAACGCGGGCATTTCGAGCTCGTCTAGCCCTTTCACAGGGGGGAAGAGAGGATCCGTCCCTTCAGTTC CTTCTTCACTGAGGGTAGTGGCCGTCAATTCCAACAGGGATCGAAACGGGAGCGTTTTGACGGAGACCACGCGCAAGGACGTGAGAGATGGAGCCGCCTC GTCTTCTTCTGTGATTGACGTCGACTCCAAATCCACCGTTGCTCCTGGTGGGCCCCATGACGTTTACGGTGAGGATGCTGCCACCGAGGAGCAGGTTGTC ACCCCCTGGTTTGTCTCTGTTGCCAGTGGGTATTCTTTGTTGCGAGATCCACACCACAACAAAGGACTTGCTTTCACTGATAAAGAGAGAGCCGCCCACT ACTTGCGTGGCCTTCTTCCCCCAGCAGTCGTTTCTCAGGAGCTTCAGGTGAAGAAACTGATGCATATTATTCGCCAATATCAAGTTCCATTACAGAAGTA CATGGCTATGATGGATCTTCAGGAGAGCAATGAAAAATTGTTCTACAAGCTTCTCATTGACAATGTTGAGGAAATGCTCCCTATCGTCTACACTCCAACT GTCGGTGAAGCTTGCCAAAAATATGGGAGCATCTTTGGCCGTCCTCAGGGTCTTTATATTAGTTTGAAAGAAAAGGGTTGCATTCATGAGGTGTTGAGGA ACTGGCCTGAGAAAAACATTGAAGTCATTGTTGTCACTGATGGAGAGCGGATTTTGGGCCTAGGGGACCTAGGCTGTCAGGGCATGGGGATTCCAGTAGG GAAACTAGCTTTGTATACAGCACTTGGTGGAGTTCGTCCTTCAGCTTGTTTGCCTGTAACAATTGATGTGGGGACGAACAATGAGAATTTGTTAAACGAT GAGTACTACATAGGGCTCAGGCAAAGAAGGGCAACTGGACAGGAATATGCTGAACTGCTACATGAATTCATGTCTGCTGTCAAGCAGACTTACGGTGAGA AAGTCCTCATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTTGCAAAATATAGCACAACTCATCTTGTTTTCAATGATGATATTCAGGG CACAGCATCAGTGGTCCTTGCAGGGCTTGTTGCAGCCCTAAAGGTAGTTGGTGGAACTTTAGCTGACCACACATTCTTATTTCTTGGTGCTGGAGAGGCT GGCACTGGAATTGCAGAACTCATAGCCCTTGAGATTTCCAAACAGACAAATATGCCAGTGGAAGAGACTCGCAAGAAGGTTTGGCTTGTAGACTCAAAGG GGTTGATTGTTAGTTCCCGCAGGGAATCACTCCAACATTTCAAGAAGCCCTGGGCTCATGAACATGAACCCGTTAAGACACTTCTAGATGCTGTTAATGA CATCAAGCCAACAGTGTTGATTGGAACATCAGGAGTTGGAAAAACATTTACTAAAGAAGTGATTGAAGCCATGGCATCCTTCAATGAGAAACCTATAATT CTCTCTCTTTCCAACCCAACTTCACAATCTGAATGTACCGCTGAAGAGGCTTATACATGGAGTCAGGGGCGCGCCATTTTTGCTAGTGGAAGTCCATTTG CTCCTTTTGAATATGAGGGTAAAACTTTCATGCCTGGCCAGGCAAACAATGCATACATTTTCCCTGGATTAGGTCTGGGTCTAATAATGTCTGGTGCAAT CCGTGTCCATGACGACATGTTGCTGGCTGCCTCGGAAGCTTTGGCTGCTCAGGTGACCCAGGAGAACTTTGATAAGGGACTTATCTACCCTCCATTCAAA AATATCAGAAAGATTTCAGCAGAGATTGCTGCGAAGGTGGCTGCTAAAGCTTACGAGCTTGGTTTGGCTACTCGCGTTCCTCCGCCAAGGGATCTGGTGA AGCATGCTGAGAGCTGTATGTACAGCCCTGCTTATCGAAGCTACCGTTGA
AA sequence Show only first row Show all	>Potri.001G189700.5 pacid=42791424 polypeptide=Potri.001G189700.5.p locus=Potri.001G189700 ID=Potri.001G189700.5.v4.1 annot-version=v4.1 MMSLNRSIFLSNAGISSSSSPFTGGKRGSVPSVPSSLRVVAVNSNRDRNGSVLTETTRKDVRDGAASSSSVIDVDSKSTVAPGGPHDVYGEDAATEEQVV TPWFVSVASGYSLLRDPHHNKGLAFTDKERAAHYLRGLLPPAVVSQELQVKKLMHIIRQYQVPLQKYMAMMDLQESNEKLFYKLLIDNVEEMLPIVYTPT VGEACQKYGSIFGRPQGLYISLKEKGCIHEVLRNWPEKNIEVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPVTIDVGTNNENLLND EYYIGLRQRRATGQEYAELLHEFMSAVKQTYGEKVLIQFEDFANHNAFDLLAKYSTTHLVFNDDIQGTASVVLAGLVAALKVVGGTLADHTFLFLGAGEA GTGIAELIALEISKQTNMPVEETRKKVWLVDSKGLIVSSRRESLQHFKKPWAHEHEPVKTLLDAVNDIKPTVLIGTSGVGKTFTKEVIEAMASFNEKPII LSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPFEYEGKTFMPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAASEALAAQVTQENFDKGLIYPPFK NIRKISAEIAAKVAAKAYELGLATRVPPPRDLVKHAESCMYSPAYRSYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.001G189700 [exp]	0	1
AT5G35110			unknown protein		Potri.018G113700 [exp]	4.69	0.7137
AT4G27280			Calcium-binding EF-hand family...		Potri.011G039600 [exp]	6.70	0.6999
AT1G55210			Disease resistance-responsive ...		Potri.003G216300 [exp]	9.16	0.6691
AT4G27280			Calcium-binding EF-hand family...		Potri.011G039500 [exp]	13.26	0.6527
AT5G38220			alpha/beta-Hydrolases superfam...		Potri.017G117633 [exp]	20.49	0.6405
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.007G009100 [exp]	21.23	0.6698	Pt-MDH.1
AT5G18310			unknown protein		Potri.019G029600 [exp]	25.61	0.6278
AT1G70780			unknown protein		Potri.008G131600 [exp]	27.49	0.6575
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.014G146100 [exp]	31.22	0.6601	Pt-XTR7.1
AT1G10740			alpha/beta-Hydrolases superfam...		Potri.008G187900 [exp]	34.46	0.6996

Compare expression of checked genes

Potri.001G189700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.