Plant FIBer expression Database

PAFA901 (Potri.001G190000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PAFA901
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79730 563 / 0 ELF7 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G048900
[exp]
795 / 0 AT1G79730 546 / 0.0 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037558
[exp]
624 / 0 AT1G79730 580 / 0.0 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03985 Paf1 Paf1
Representative CDS sequence
>Potri.001G190000.2 pacid=42787925 polypeptide=Potri.001G190000.2.p locus=Potri.001G190000 ID=Potri.001G190000.2.v4.1 annot-version=v4.1
ATGGCCTCCTATAGGCCATTCCCTGCACCACCTCCACCTCCACCTCCACCACAGCAACCACCACAACCACAACCACAACCACCGCCACCACCACAACAAC
TGCAAAGACCAAATCAGTATCCTCAAAACTACAATCCTCAATTGGCCCCACCACCACCACCACAAAACTATCAGAATTTCTCGCAACATTACCCTCAGCC
GCCCCGCCCTGCTCCACCTCCTCCATTGCCTCACCAACAATACCCTTATCAGCCACCCCCTCCTCCTGAATCCTCATACCCACCTCCTCCTCCACCAGCA
CCACAACAGCAACGGCCACCACCACCTAATTTGTACTACCCGCCTTCACATTACGGTCATCAACCAATGCAGCATCCACCTCCACCTCCACCCCCTCCCC
CTTCATCTCCTCCACCTAGTTCTTCAGCTCCACCCCCACCACCTCCCAGCTCCCCACCCCCAGCCCCTCCTGCTGTTGAAAGAGATAAAGGGGTATATCG
GGAGAGTAGGGAATATGATAATTCCAATCATGGGAAACATCATCATCAACAACACAAGCCACAGCTTCCACCTGTGGGAAAGAAGGCGAATGGGCACTCT
GGGAGAGCGGAGACAGATCAGGAGAGGAGGTTGAGGAAGAAGAGAGAGTTTGACAAGCAAAGGCAGGAGGAGAAGCATAGACAGCTGTTGAAAGAGTCAC
AGAACCCAGCTCTGCCGAAGAACCAGATGATGTCTTCTCAGAAAGGGCATGGTTCCATTGCTGGTTCACGATTGGGGGATAGGAGGGCCACTCCATTGTT
GGGTGCGGAGAGGACTGAGAATAGGTTGAAGAAGCCAACGACCTTCTTGTGCAAGTTGAAATTCCGGAATGAACTTCCTGATCCGAGTGCCCAACCAAAG
CTGATGCCTTTAAAGAGAGATAAAGATCGATATACAAAATACACAATCACATCTTTGGAGAAAATGTATAAACCTCAACTATATGTTGAGCCAGATCTTG
GAATACCTCTGGACTTGCTTGATCTCAGTGTATACAATCCTCCTAGTATTAGACCACCTCTTGCTCCTGAAGATGAGGAATTGTTGCGTGACGATGAGAC
AGTCGCCCCTGTAAAAAGAGATGGCATAAGAAGAAAAGAACGGCCAACAGATAAAGGTGTTTCTTGGCTGGTTAAGACACAGTATATATCTCCTCTGAGC
ATGGAGTCAACCAAATCTCTGAACAAAAACCAAGCTAAAGAACTGAGAGAAATGAAGGGAGGTCGGAATCTTTTGGACAATCTCAATAACAGGGAGAGAC
AGATCAAGGAAATTCAAGCATCTTTTGAGGCAAACAAGTTACCTCCTGTGCACGCAACTAATAAAAACTTACATCCAATCGAGGTTCTGCCTCTGCTGCC
TGATTTTGATCGGTATGAAGATAAATTTGTCACAGCAACATTTGATGGTGCTCCTACAGTTGATGCAGAAAATTACAACAAGTTCGATTCATCTGACCGT
GAAGCCTATGAATCACGGGCTATTATGAAAGCTTGTGTGGCAACTGGTTCAGATCCAACTAACCCAGAAAAATTTTTGGCATACATGGTACCTTCTCCTG
ATGAGATGTCGAAGGATATGCATGATGAGAGTGAGGATATCTCATATTCTTGGATTCGCGGGTATCATTGGGATATACGGGGGGATGATGCCAATGACCC
TACAACATTCCTTGTTTCATTTGATGAGGCTGAAGCTCGCTACTTGCCTCTTCCCACAAAGATTAATTTAACAAAGAGGAGAGCCAGAGAGGGAAGATCA
GGTGACGAGATTGAACATTTTTCTGTACCCTCAAGAGTAACTGTGAGGAAAAGAGCCATTGCTGCTACAATTGAACAGAGGAATTTGGGGGCTGCTTCAA
GTTCAAGGGGTAATGATTCAAGGATGGGAGGAAGGTTTGAGGATGATGATGGCCTTGGAAGATTACAGAGGGTTGCTCAAGATGAGGACCTTGAACAGTC
TAGTGAGGCAGAAGATGAGATGTCTGAATGA
AA sequence
>Potri.001G190000.2 pacid=42787925 polypeptide=Potri.001G190000.2.p locus=Potri.001G190000 ID=Potri.001G190000.2.v4.1 annot-version=v4.1
MASYRPFPAPPPPPPPPQQPPQPQPQPPPPPQQLQRPNQYPQNYNPQLAPPPPPQNYQNFSQHYPQPPRPAPPPPLPHQQYPYQPPPPPESSYPPPPPPA
PQQQRPPPPNLYYPPSHYGHQPMQHPPPPPPPPPSSPPPSSSAPPPPPPSSPPPAPPAVERDKGVYRESREYDNSNHGKHHHQQHKPQLPPVGKKANGHS
GRAETDQERRLRKKREFDKQRQEEKHRQLLKESQNPALPKNQMMSSQKGHGSIAGSRLGDRRATPLLGAERTENRLKKPTTFLCKLKFRNELPDPSAQPK
LMPLKRDKDRYTKYTITSLEKMYKPQLYVEPDLGIPLDLLDLSVYNPPSIRPPLAPEDEELLRDDETVAPVKRDGIRRKERPTDKGVSWLVKTQYISPLS
MESTKSLNKNQAKELREMKGGRNLLDNLNNRERQIKEIQASFEANKLPPVHATNKNLHPIEVLPLLPDFDRYEDKFVTATFDGAPTVDAENYNKFDSSDR
EAYESRAIMKACVATGSDPTNPEKFLAYMVPSPDEMSKDMHDESEDISYSWIRGYHWDIRGDDANDPTTFLVSFDEAEARYLPLPTKINLTKRRAREGRS
GDEIEHFSVPSRVTVRKRAIAATIEQRNLGAASSSRGNDSRMGGRFEDDDGLGRLQRVAQDEDLEQSSEAEDEMSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Potri.001G190000
[exp]
0 1 PAFA901
AT4G02560 HD LD luminidependens, Homeodomain-l... Potri.014G132800
[exp]
2.64 0.9113 Pt-LD.2
AT1G21610 wound-responsive family protei... Potri.005G182300
[exp]
4.24 0.8920
AT4G02560 HD LD luminidependens, Homeodomain-l... Potri.002G209216
[exp]
5.29 0.9061
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Potri.005G107600
[exp]
6.48 0.8993 Pt-RPB1.1
AT4G31880 unknown protein Potri.006G263300
[exp]
6.63 0.8935
AT3G06480 DEAD box RNA helicase family p... Potri.010G152400
[exp]
7.48 0.8751
AT5G38840 FHA SMAD/FHA domain-containing pro... Potri.004G111500
[exp]
8.00 0.8817
AT4G31160 DCAF1 DDB1-CUL4 associated factor 1 ... Potri.006G280200
[exp]
9.89 0.8891
AT3G14010 CID4 CTC-interacting domain 4 (.1.2... Potri.003G063000
[exp]
10.39 0.8393
AT5G23150 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP... Potri.005G092700
[exp]
10.48 0.8933

Potri.001G190000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.