Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51940 824 / 0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 270 / 2e-81 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT5G02800 212 / 2e-62 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G24790 209 / 1e-61 Protein kinase superfamily protein (.1) AT2G28590 210 / 5e-61 Protein kinase superfamily protein (.1) AT3G07070 208 / 1e-60 Protein kinase superfamily protein (.1) AT2G17220 207 / 2e-60 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G20650 206 / 4e-60 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G07870 207 / 6e-60 Protein kinase superfamily protein (.1.2) AT3G20530 204 / 2e-59 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081601 [exp] 340 / 3e-108 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 340 / 4e-108 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 338 / 2e-107 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 320 / 6e-101 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 282 / 5e-86 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 281 / 8e-86 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 270 / 1e-81 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.006G133300 [exp] 214 / 9e-63 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 213 / 2e-62 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006841 [exp] 874 / 0 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 871 / 0 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 323 / 3e-101 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 322 / 4e-101 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 308 / 5e-96 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10030022 [exp] 281 / 4e-86 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035301 [exp] 273 / 1e-82 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 280 / 4e-82 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10041426 [exp] 213 / 1e-62 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 212 / 2e-62 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G190200.1 pacid=42791363 polypeptide=Potri.001G190200.1.p locus=Potri.001G190200 ID=Potri.001G190200.1.v4.1 annot-version=v4.1 ATGAATCATCTTCCAAGGACAAGTTTCTTGATTCCGGTACTATGCTTTCTTTGTCTTCAAATCCAACCTTTACACTCATTTTCAACACAACCCATGAACT GTACGGACACTACACGACTGTGCACATCGTTTTTGGCCTTTAAACCCCAGGAGAACCTAACTCTAGCAATGATTCAAAGCATGTTTGATGTGTTACCCCA AGATGTGACCAGAGAAGGCAATGGCCATGGCTACATATTCATCAAGAAGAACTGCTCTTGTTTGTCCAAGGACAAAGTCTATGTGACTAACTCTACATAT ACAGTGAAATTCAGTGGGGGTTATGTTTATGACATCGTGATCAATGCTTATGACGGGCTTGCTTTCTTGCCCAACACAACAAGACAAGCAAAGGTTGGTG CTGTTGTGTCATTGAGGTTGTTCTGTGGGTGTTCAAGTGGGTTGTGGAATTATTTGGTGAGTTATGTGATGAAGGAAGGAGATACTGTTCAGTCCTTGTC TAGTCGATTTGGTGTTAGTATGGATAATATTGAGACAGTGAATGGGATTCAGAATCCTGATAATGTTACAGCTGGTGCGCTGTATTATATTCCTCTGAAT TCAGTTCCCGGGGAACCTTATCCCTTGGAGAATGATAATCCTCCTGCTCCTGTTCCTGCACCTCCGGATGACATTTTCTCAGCAAATATTCCAACAATTC ACAAGGCTCGTGTACCATATGGATGGATCATAGGGGGTCTTGGGATCGGTCTTGCACTGATTGTATTATGTATAATTATTTGTGTGTCTCTTAAGTCCTC AAGTTGCTTATCTGAATCTCGAGGAAGTCACGCCAAGCCTCCTGATGGCAAGATTTCTCAAAAGTTTCATATTCTTCGCAAGCAAAGCTTTTGTTGTACT TCTAGAAGGTCCATCTGCTGCAAATCTGTAGACTGGAAGCAAACAAATGGGGAGTCTAGCAGCCACCAGATTACTATACCTAAAGGTCTAGCAACTGATG TATTTGATGAGAAGCCTGTGGTTTTTACATACGAAGAAATTCTTTTTGCAACTGATGAATTTTTGGATTCTAGTCTTCTTGGTCATGGAACATATGGTTC TGTGTATTATGGTCACCTTCATGACCAGGAAGTTGCTATTAAGAGAATGACTGCTACAAAAACTAAAGAATTTATGGCTGAGATGAAAATCCTGTGCAAG GTCCATCATACAAATCTGGTAGAATTGATTGGCTACGCAGCTAGTGATGCAGAGCTCTTCGTGATCTATGAATATGCACAGAAGGGTTCACTTAGAAGTC ATTTACATGATCCCCAAAATAAGGGTCATACACCACTTTCATGGATCATGCGGGTCCAGATTGCACTTGATGCAGCTAGAGGCCTGGAGTACATCCATGA GCACACTAAAACACACTATGTCCACCGGGATATCAAGACAAGCAACATCTTACTTGATGGTTCCTTCAGGGCCAAGATTTCAGATTTTGGATTGGCAAAA CTGGTTGGCAAAACAGGCGAGGGAGAAGCTACAGCAACAAAAGTTGTTGGTACATATGGTTATCTAGCACCAGAATACTTGAGTGATGGCCTTGCCACAA CCAAGAGTGATGTTTATGCATTTGGTGTCGTTCTTTTTGAGATCATATCTGGGAAGGAAGCCATAATAAGAACTGAAGGTGCGGTTACAAAAAATCCTGA AAGACGTTCACTGGCATCTACTATGCTAGCAGCTCTTAGGAACACACCTGACTCCATGAGCATGTCAAGCTTGAAAGACCTCATTGATCCTAATATGATG GATTTATATCCCCATGATTGTGTATTCAAGTTGGCCATGCTAGCAAAGCAATGTGTGGATGAGGATCCCATCCTACGGCCTGACATGAAGCAAGTTGTGA TTTCCCTGTCACAAATTGTTTTATCCTCCATTGAGTGGGAAGCAACTCTTGCTGGGAACAGCCAAGTTTTCAGTGGTCTTGTCCAAGGAAGGTAG
AA sequence Show only first row Show all	>Potri.001G190200.1 pacid=42791363 polypeptide=Potri.001G190200.1.p locus=Potri.001G190200 ID=Potri.001G190200.1.v4.1 annot-version=v4.1 MNHLPRTSFLIPVLCFLCLQIQPLHSFSTQPMNCTDTTRLCTSFLAFKPQENLTLAMIQSMFDVLPQDVTREGNGHGYIFIKKNCSCLSKDKVYVTNSTY TVKFSGGYVYDIVINAYDGLAFLPNTTRQAKVGAVVSLRLFCGCSSGLWNYLVSYVMKEGDTVQSLSSRFGVSMDNIETVNGIQNPDNVTAGALYYIPLN SVPGEPYPLENDNPPAPVPAPPDDIFSANIPTIHKARVPYGWIIGGLGIGLALIVLCIIICVSLKSSSCLSESRGSHAKPPDGKISQKFHILRKQSFCCT SRRSICCKSVDWKQTNGESSSHQITIPKGLATDVFDEKPVVFTYEEILFATDEFLDSSLLGHGTYGSVYYGHLHDQEVAIKRMTATKTKEFMAEMKILCK VHHTNLVELIGYAASDAELFVIYEYAQKGSLRSHLHDPQNKGHTPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAK LVGKTGEGEATATKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKEAIIRTEGAVTKNPERRSLASTMLAALRNTPDSMSMSSLKDLIDPNMM DLYPHDCVFKLAMLAKQCVDEDPILRPDMKQVVISLSQIVLSSIEWEATLAGNSQVFSGLVQGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51940			protein kinase family protein ...		Potri.001G190200 [exp]	0	1
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.003G073700 [exp]	2.64	0.6828
AT5G50140			Ankyrin repeat family protein ...		Potri.001G187600 [exp]	10.48	0.5875
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.005G184500 [exp]	12.96	0.6118
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.001G283000 [exp]	17.60	0.6475
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Potri.009G158200 [exp]	23.36	0.5907
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.007G010800 [exp]	24.95	0.4872	SVP.1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014304 [exp]	26.00	0.6034
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.010G199300 [exp]	30.14	0.5877
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Potri.012G071600 [exp]	40.91	0.5140	HA2.1
AT4G24630			DHHC-type zinc finger family p...		Potri.002G065500 [exp]	42.42	0.5773

Compare expression of checked genes

Potri.001G190200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.