Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29130 648 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 647 / 0 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G50460 429 / 9e-147 ATHKL1, HKL1 hexokinase-like 1 (.1) AT1G47840 409 / 4e-139 HXK3 hexokinase 3 (.1) AT3G20040 404 / 1e-136 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT4G37840 325 / 3e-106 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088300 [exp] 680 / 0 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.005G238600 [exp] 484 / 4e-168 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.001G254800 [exp] 471 / 3e-163 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 447 / 2e-153 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.007G009300 [exp] 429 / 9e-147 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038287 [exp] 707 / 0 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 691 / 0 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 651 / 0 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 617 / 0 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10025815 [exp] 608 / 0 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10024336 [exp] 490 / 2e-170 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 482 / 3e-167 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10005019 [exp] 443 / 1e-151 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 433 / 4e-148 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10011584 [exp] 281 / 1e-89 AT4G37840 374 / 1e-125 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00349 [poplar] [flax] Hexokinase_1 Hexokinase CL0108 [poplar] [flax] Actin_ATPase PF03727 [poplar] [flax] Hexokinase_2 Hexokinase
Representative CDS sequence Show only first row Show all	>Potri.001G190400.1 pacid=42788419 polypeptide=Potri.001G190400.1.p locus=Potri.001G190400 ID=Potri.001G190400.1.v4.1 annot-version=v4.1 ATGGAGAAGAAGGTGGTGGTAGCTGTTGTATGTGTGGCTGCGGTGGCCGGGGCTGTCGCGGCGGCATCAGTTGTGAAAAGGAAAATGAAGAGGGACAGGA GATGGGCCAAGGCAATGGAGATGGTGAAGGAAATGCAGGAGAAATGTGGAACTCCGATCGGGAAATTGAAGCAGGTGGCTGATGCCATGGTTGTTGAGAT GCACGCTGGCCTTGCCTCTGAAGGTGGCAGCAAGCTGAAGATGCTTATCAGCTATGTCGATAATTTGCCTTCTGGTGATGAGAAAGGATTGTTTTATGCG TTGGATCTTGGTGGAACAAACTTCCGTGTATTGAGGGTGCAGTTGGGGGGGAAGGACGGTGGACTTGTTAATCAAGAATTCACTGAGGTGTCAATTCCAC CAAATTTGATGATTGGGACTTCAGATGCACTTTTTGACTATATTGCAGCAGAACTTGCAAAATTTATTGCTCAAGAAGGTGAAGAGTTTGAACTTCCTCC TGGTAAACAGAGAGAGTTAGGTTTCACGTTCTCATTCCCTGTCATGCAAACGTCCATTGCTTCTGGGACCCTTGTTAGGTGGACGAAAGGCTTCTCTATA GATGACGCAGTTGGCCAAGATGTGGTGGCAGAATTGACTAGAGCCATGAAAAGACAAGGCCTCGATATGCGTGTGTCAGCTCTGGTCAATGATACGGTTG GAACACTAGCGGGAGGTAAATATTCCTACAAGGATGTTGTTGCTGCTGTGATTTTAGGTACTGGATCTAATGCTGCGTATGTGGAACATGCACAAGCAAT ACCAAAATGGCATGGTGATCTGCCAAAATCCGGCGAGATGGTTATAAACATGGAGTGGGGTAACTTTAGGTCATCTCATCTTCCACTAACTGAGTATGAT CATGCAATGGATAATGAAAGTTTAAATCCCGGTGAGCAGATTTTTGAGAAGTTAATCTCTGGTATGTACTTGGGTGAAATAGTACGCAGAGTTCTACTAA AGATGGCTGAAGAAGCTGCTTTTTTTGGTGACATTGTTCCTCCAAAACTCAAGATTCCCTTCATACTGAGGACGCCTGATTTGTCAGCAATGCATCATGA TTCATCCTCCGATCTTATATTGGTTGACAAAAAATTGAAGGATATCCTAGAGATATCCAATGCCTCCCTTCAAACAAGAAAGGTCGTGGTTGAGCTTTGC AACATTGTTGCAACCCGTGGGTCCCGTCTTGCAGCTGCTGGGATCTTGGGTATCCTGAAGAAAATAGGAAGAGACACCGTCAAAGATATGGATGAACAGA AAACGGTGATAGCCATGGATGGTGGATTGTTTGAGCACTACAGTGAATACAGCAAGTGCTTGGAGAACACCCTCAATGAATTGCTTGGAGAAGAAGTGTC GAAAACCATCTCGATTGAGCACGCCAATGATGGCTCAGGCCTTGGAGCTGCCCTGCTTGCTGCCTCACATTCACTGTATCTTTAA
AA sequence Show only first row Show all	>Potri.001G190400.1 pacid=42788419 polypeptide=Potri.001G190400.1.p locus=Potri.001G190400 ID=Potri.001G190400.1.v4.1 annot-version=v4.1 MEKKVVVAVVCVAAVAGAVAAASVVKRKMKRDRRWAKAMEMVKEMQEKCGTPIGKLKQVADAMVVEMHAGLASEGGSKLKMLISYVDNLPSGDEKGLFYA LDLGGTNFRVLRVQLGGKDGGLVNQEFTEVSIPPNLMIGTSDALFDYIAAELAKFIAQEGEEFELPPGKQRELGFTFSFPVMQTSIASGTLVRWTKGFSI DDAVGQDVVAELTRAMKRQGLDMRVSALVNDTVGTLAGGKYSYKDVVAAVILGTGSNAAYVEHAQAIPKWHGDLPKSGEMVINMEWGNFRSSHLPLTEYD HAMDNESLNPGEQIFEKLISGMYLGEIVRRVLLKMAEEAAFFGDIVPPKLKIPFILRTPDLSAMHHDSSSDLILVDKKLKDILEISNASLQTRKVVVELC NIVATRGSRLAAAGILGILKKIGRDTVKDMDEQKTVIAMDGGLFEHYSEYSKCLENTLNELLGEEVSKTISIEHANDGSGLGAALLAASHSLYL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.001G190400 [exp]	0	1
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	3.16	0.9497
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	4.12	0.9516
AT3G16060			ATP binding microtubule motor ...		Potri.003G053800 [exp]	5.83	0.9414
AT4G12650			Endomembrane protein 70 protei...		Potri.014G172200 [exp]	5.91	0.9478
AT5G11960			Protein of unknown function (D...		Potri.018G060500 [exp]	6.00	0.9490
AT5G35160			Endomembrane protein 70 protei...		Potri.006G189300 [exp]	6.70	0.9422
AT1G64650			Major facilitator superfamily ...		Potri.003G145600 [exp]	6.92	0.9488
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075525 [exp]	7.74	0.9484
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	12.24	0.9392
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	12.48	0.9436

Compare expression of checked genes

Potri.001G190400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.