Plant FIBer expression Database

Potri.001G190450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G055201
[exp]
85 / 8e-22 ND /
Potri.002G000350
[exp]
59 / 4e-11 AT1G43760 74 / 8e-14 DNAse I-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014736
[exp]
48 / 3e-08 ND /
Lus10016313
[exp]
39 / 0.0003 ND /
PFAM info
Representative CDS sequence
>Potri.001G190450.1 pacid=42789659 polypeptide=Potri.001G190450.1.p locus=Potri.001G190450 ID=Potri.001G190450.1.v4.1 annot-version=v4.1
ATGAATTGTTTAAGTTGGAACTGTCGAGAACCTAGTAACTCTAGTGCAGTTCAAGCTCTTAAAAGGTTAATGTTGTCTAGAAATCCAAATGCTATTTTTC
TTTTGGAGACTAAAGTTGATAGTAGTAGAATTGAATCTATTAGAGGGGAAATTAAGATTGATGGGTGTTTTGCAGTTGATAGATTGGGAAGGAGGGGTGG
TTTAGTTGTGTTTTGGAAGGGTCCAGAGGTTATTATATTAATTAGATACTCTCAGAACCATGTGGATTTAGAAGTGGTGAGTACATACTCTTTTCAATGG
AGATTAATGAGTTTTTTATGGGTTTCTAGAATGACATAG
AA sequence
>Potri.001G190450.1 pacid=42789659 polypeptide=Potri.001G190450.1.p locus=Potri.001G190450 ID=Potri.001G190450.1.v4.1 annot-version=v4.1
MNCLSWNCREPSNSSAVQALKRLMLSRNPNAIFLLETKVDSSRIESIRGEIKIDGCFAVDRLGRRGGLVVFWKGPEVIILIRYSQNHVDLEVVSTYSFQW
RLMSFLWVSRMT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G190450
[exp]
0 1
AT1G04110 SDD1 STOMATAL DENSITY AND DISTRIBUT... Potri.014G193200
[exp]
4.24 0.6346
AT4G22080 RHS14 root hair specific 14 (.1) Potri.004G007300
[exp]
9.79 0.6483
AT5G47670 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6"... Potri.006G005000
[exp]
11.31 0.6483
AT4G33550 Bifunctional inhibitor/lipid-t... Potri.009G048800
[exp]
17.32 0.6147
AT3G02100 UDP-Glycosyltransferase superf... Potri.010G084900
[exp]
19.33 0.6208
AT5G13620 unknown protein Potri.008G045000
[exp]
21.16 0.6039
AT1G43760 DNAse I-like superfamily prote... Potri.004G128941
[exp]
21.49 0.5098
AT3G47870 AS2 ASL29, SCP, LBD... SIDECAR POLLEN, ASYMMETRIC LEA... Potri.012G072000
[exp]
22.36 0.5664 Pt-LBD27.1
AT1G43730 RNA-directed DNA polymerase (r... Potri.004G000150
[exp]
23.36 0.5652
Potri.007G009000
[exp]
23.55 0.5980

Potri.001G190450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.