Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16490 293 / 3e-96 IQD26 IQ-domain 26 (.1) AT1G51960 154 / 3e-43 IQD27 IQ-domain 27 (.1) AT4G29150 134 / 4e-35 IQD25 IQ-domain 25 (.1) AT4G14750 85 / 9e-18 IQD19 IQ-domain 19 (.1) AT4G23060 64 / 6e-11 IQD22 IQ-domain 22 (.1) AT1G01110 53 / 2e-07 IQD18 IQ-domain 18 (.1.2) AT4G00820 53 / 2e-07 IQD17 IQ-domain 17 (.1) AT5G62070 50 / 2e-06 IQD23 IQ-domain 23 (.1) AT1G17480 46 / 4e-05 IQD7 IQ-domain 7 (.1) AT2G26180 45 / 5e-05 IQD6 IQ-domain 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G047800 [exp] 600 / 0 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.008G156700 [exp] 104 / 3e-24 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 97 / 8e-22 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.012G139800 [exp] 89 / 7e-19 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 80 / 4e-16 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.005G051500 [exp] 68 / 3e-12 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.001G108800 [exp] 65 / 3e-11 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.001G448100 [exp] 57 / 1e-08 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.003G122800 [exp] 57 / 1e-08 AT4G23060 109 / 1e-25 IQ-domain 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011131 [exp] 232 / 1e-71 AT3G16490 223 / 2e-68 IQ-domain 26 (.1) Lus10043033 [exp] 169 / 5e-48 AT3G16490 197 / 3e-59 IQ-domain 26 (.1) Lus10021904 [exp] 87 / 3e-18 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10006613 [exp] 82 / 1e-16 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10041188 [exp] 69 / 2e-12 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10014870 [exp] 55 / 7e-08 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10010104 [exp] 53 / 3e-07 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 52 / 5e-07 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10017841 [exp] 48 / 9e-06 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10027435 [exp] 48 / 1e-05 AT5G62070 207 / 3e-62 IQ-domain 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.001G190500.1 pacid=42792371 polypeptide=Potri.001G190500.1.p locus=Potri.001G190500 ID=Potri.001G190500.1.v4.1 annot-version=v4.1 ATGAAGATGGGCAGAGCTTCAAGGTGGCTTAAGGGCTTATTAGGCATGAAGAAAGACAAAGATAAAGAAAGAGAGGATGTTGCCACACAAATTTCAAGTG ACAAGAAAGAGAAGAAAAGGTGGAGTTTTGCCAAATCAGGGAAGGACGACGCTCCAGCGAATCGCTCTGGGAGCATGAAAGATGATGCCTGGCTTAGATC CTACCTTTCTGAAACAGAAAGAGAGCAGAACAAGCATGCGATTGCAGTGGCAGCAGCCACAGCTGCAGCTGCCGATGCAGCAGTGGCTGCGGCTCAGGCA GCGGTGGCGGTTGTGAGGCTCACCAGCCATGGCAGAGGGACAATGTTTGGTGGAGGGAGGGAGAGATGGGCTGCAGTCAAAATTCAAACTGTCTTTAGAG GCTACTTGGCTCGAAAAGCTCTTCGCGCATTGAAAGGGCTGGTTAAGCTACAAGCAGTTGTTAGGGGCTATTTAGTCCGGAAACGGGCTACAGCAACCCT TCACAGCATGCAAGCCCTTATAAGAGCTCAAAATGCTATTAGATCTCAACGCGCTCGTCGTTCTTTCAACAAAGAGAATAGATTTTCTGAACACAGACCA CGAAAAGCCATTGAGAGGTTTGATGATACTAGAAGTGAATTTCACAGCAAGAGGCTATCTACATCTTGTGACATGACTGCATTTGATGAAAGCCCTAAGA TAGTTGAAATTGACACCTACAAGCCAAGATCAAGGTCTCGTAGAATCAACGTTGCCTCATCGGAATGCGGTGAAGAACTTCCTTACCAGGCTATCTCGTC ACCTCTTCCATGTCCAATGCCAGCTAGAATCTCCATACCCGAGTGCAAAGGATATCAAGATTTTGAGTGGTACTTCAATGGGGAGGAGTGTAGGTTCTCC ACTTCACACAGTACTCCAAGATTTGCAAACTCTGCCCAGTCCATTGCCCCTGCCACTCCTGCAAAGAGTATTTGCGGAGATGCTTACTTTAGGCCTTATT TGAACTTTCCTAATTACATGGCAAACACGCAGTCTTTTAAGGCCAAATTGAGGTCTCATAGCGCGCCAAAGCAAAGACCAGAACCGGGGTCAAAGAAGAG GCTTTCACTCAATGAAATAATGGCATCAAGGAATAGTATAAGCAGTGTTAGAATGCAGCGGCCATGCACCCAAGTTGATGAACATTTGGTCATTGACGGA TTTGTTAGTGAAGAGGTCCATCCTTATCAGAAGTGA
AA sequence Show only first row Show all	>Potri.001G190500.1 pacid=42792371 polypeptide=Potri.001G190500.1.p locus=Potri.001G190500 ID=Potri.001G190500.1.v4.1 annot-version=v4.1 MKMGRASRWLKGLLGMKKDKDKEREDVATQISSDKKEKKRWSFAKSGKDDAPANRSGSMKDDAWLRSYLSETEREQNKHAIAVAAATAAAADAAVAAAQA AVAVVRLTSHGRGTMFGGGRERWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGYLVRKRATATLHSMQALIRAQNAIRSQRARRSFNKENRFSEHRP RKAIERFDDTRSEFHSKRLSTSCDMTAFDESPKIVEIDTYKPRSRSRRINVASSECGEELPYQAISSPLPCPMPARISIPECKGYQDFEWYFNGEECRFS TSHSTPRFANSAQSIAPATPAKSICGDAYFRPYLNFPNYMANTQSFKAKLRSHSAPKQRPEPGSKKRLSLNEIMASRNSISSVRMQRPCTQVDEHLVIDG FVSEEVHPYQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16490		IQD26	IQ-domain 26 (.1)		Potri.001G190500 [exp]	0	1
					Potri.011G063600 [exp]	8.83	0.8989
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	9.27	0.9288
AT5G37010			unknown protein		Potri.015G147900 [exp]	10.58	0.9184
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	12.64	0.9281
AT3G09430			unknown protein		Potri.006G084500 [exp]	13.41	0.9212
AT3G60660			unknown protein		Potri.014G060000 [exp]	13.41	0.9189
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	14.89	0.9227	TOP2.3
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	15.49	0.9135	Pt-RANGAP1.1
AT5G27550			P-loop containing nucleoside t...		Potri.013G020700 [exp]	20.00	0.9220
AT5G65120			unknown protein		Potri.007G090500 [exp]	22.29	0.9187

Compare expression of checked genes

Potri.001G190500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.