Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56550 80 / 5e-19 ATOXS3 oxidative stress 3 (.1) AT4G26288 65 / 1e-13 unknown protein AT3G43850 51 / 1e-07 unknown protein AT5G24890 44 / 2e-05 unknown protein AT3G03170 43 / 2e-05 unknown protein AT4G31510 44 / 3e-05 unknown protein AT5G21940 43 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G048100 [exp] 48 / 1e-06 AT5G21940 110 / 4e-29 unknown protein Potri.009G120300 [exp] 44 / 6e-06 AT4G26288 45 / 2e-06 unknown protein Potri.006G273100 [exp] 44 / 1e-05 AT5G24890 129 / 1e-36 unknown protein Potri.004G158800 [exp] 42 / 3e-05 ND / Potri.018G008200 [exp] 43 / 5e-05 AT5G24890 131 / 3e-37 unknown protein Potri.006G219800 [exp] 40 / 0.0006 AT5G21940 135 / 3e-38 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025837 [exp] 87 / 1e-21 AT5G56550 65 / 2e-13 oxidative stress 3 (.1) Lus10038265 [exp] 87 / 2e-21 AT5G56550 66 / 9e-14 oxidative stress 3 (.1) Lus10011137 [exp] 80 / 1e-18 AT5G56550 74 / 2e-16 oxidative stress 3 (.1) Lus10043039 [exp] 76 / 5e-17 AT5G56550 69 / 1e-14 oxidative stress 3 (.1) Lus10034985 [exp] 75 / 7e-17 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10012939 [exp] 74 / 2e-16 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10026939 [exp] 41 / 0.0002 AT2G24550 116 / 4e-31 unknown protein Lus10020142 [exp] 40 / 0.0007 AT2G24550 113 / 9e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G190700.3 pacid=42787644 polypeptide=Potri.001G190700.3.p locus=Potri.001G190700 ID=Potri.001G190700.3.v4.1 annot-version=v4.1 ATGGGTGAAGGTCAAGAAAAAAGGCTCCAATCTCCATGTACGGCACGAAGAAATGATGATAGCTATGAAAAACATAAGGATCAATGGGTGAACATGGAAG GTGGTGGTGGTGGTGAGGATGATTCCTACAACACATCTTCCCTAGATAATTCAAGTACTACTAATGGATCAACAACTTCTTCATTAGATATGGTGGATGA TGCATGTTCATCCTCAAACTCTAATGGTCCTTTGTTTGAATTATCTGAGCTCCTGTCCCATCTGCCCATCAAGCGAGGATTATCTAAATATTATCAAGGC AAGTCCCAGTCTTTTACATCTCTATCTAGGGTAGCAAGCATTGAAGATCTTGCAAAGAACGAAACGCGTAATAGAAGGAAAGGGAAGGCATCTAAGAGTT ATTTGAATGGTTTGGATCTTCACAAATCATACACACTTCCTAAGCCCATCATAGCGAAGAAGGTATCAAGAGGTTCTATGCCATCTTTATGTTTTCCAGG TAGAAGAGGCAGTTTCTTAAATAGTGCTAGGCCGCCTCCAATTCCACTGCACAAGAAGTTCTGA
AA sequence Show only first row Show all	>Potri.001G190700.3 pacid=42787644 polypeptide=Potri.001G190700.3.p locus=Potri.001G190700 ID=Potri.001G190700.3.v4.1 annot-version=v4.1 MGEGQEKRLQSPCTARRNDDSYEKHKDQWVNMEGGGGGEDDSYNTSSLDNSSTTNGSTTSSLDMVDDACSSSNSNGPLFELSELLSHLPIKRGLSKYYQG KSQSFTSLSRVASIEDLAKNETRNRRKGKASKSYLNGLDLHKSYTLPKPIIAKKVSRGSMPSLCFPGRRGSFLNSARPPPIPLHKKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Potri.001G190700 [exp]	0	1
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Potri.001G043100 [exp]	1.00	0.9451	J8.1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.003G052800 [exp]	2.00	0.9092
AT1G54070			Dormancy/auxin associated fami...		Potri.001G164800 [exp]	2.44	0.9343
AT1G15670			Galactose oxidase/kelch repeat...		Potri.006G196900 [exp]	2.44	0.9287
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.002G020700 [exp]	3.31	0.8858
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.012G136200 [exp]	4.58	0.8993
AT4G27450			Aluminium induced protein with...		Potri.011G049900 [exp]	5.91	0.9021
AT1G60160			Potassium transporter family p...		Potri.010G094400 [exp]	7.34	0.8761
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Potri.009G100800 [exp]	7.74	0.8592	Pt-MCCB.1
AT1G67480			Galactose oxidase/kelch repeat...		Potri.010G059200 [exp]	8.48	0.8568

Compare expression of checked genes

Potri.001G190700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.