Plant FIBer expression Database

Potri.001G191200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50340 645 / 0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038258
[exp]
652 / 0 AT5G50340 615 / 0.0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1)
Lus10025843
[exp]
613 / 0 AT5G50340 553 / 0.0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF13481 AAA_25 AAA domain
CL0329 S5 PF13541 ChlI Subunit ChlI of Mg-chelatase
Representative CDS sequence
>Potri.001G191200.4 pacid=42789329 polypeptide=Potri.001G191200.4.p locus=Potri.001G191200 ID=Potri.001G191200.4.v4.1 annot-version=v4.1
ATGCAAACCACAGCCATGAAAGTAATAAGATCATTCTACACTTTCAAAAACCGTTTCCTCTTAAAACCCAACCCTATTTTTCTCTCCCGCCATTTCCACC
TCACCACCTCCCCTTTCCTTTCCAAAGAATCTGGCCTCGCTGTCCATTCCTCCGCAAACGACCCCATTCCCATTGACAGCTCCAAAAATGCCCCTCTAGT
TTGGAGTGTTTTCGACCCAATCTCGGATGGGACAGTGACGCAGAGTGGCGCCAGCAGTAGTGCTGAGTTTAGAGAATCGGAGCTCAGGCTGTCCAGTTTT
GATGAGGAAGTGGATGGCTTAGCGGGAGAGAATTTAATCAAACGAGAGAAAACCCAGATGGGATTGCCGAGTAATCGTAATGAAATAGAGGATTTGAAGA
AGGAAAAGAGATATGTGGGTGTGAAGAAGGGGAGTTCAGTTAATGGGGCGGTGGGATCTGGGGATAGAGCGGTGTATAGGACGAAGGGGAAAAGTAAAAC
TAGTTGGGTTTGCGAAATTTGTGGGTTTACATCAGGGCAATGGTGGGGGTCTTGTCGATCGTGCAATGAAGTAGGGACAATGAAGCAGTTTTTTGAGGCG
AAAATTGGGAGTGGGAATAAGGTGAGTGGGATTGAGGCTTCGGAGAATGCAGTGCGGTCTTGGCTGCCACAGAAGCCTGGGGAGTTGCGTCCCTTGAGGC
TGACAGATGTGAATCGTGGGATGAATATGTTGAATTGGCGTATTCCTTTGTCTGGACTTTTTGGAAGTGAAGTTGAAAGGGTGCTTGGGGGTGGTCTTGT
TCCAGGTTCTTTGGTTTTGGTTGGTGGTGATCCTGGGGTCGGCAAGAGCACACTGTTATTGCAGGTTGCTGCAATAATAGCTGACAGTGAGGATCCTGGT
GGATCAGCTCCAGTTGTATATGTTTCTGGTGAAGAGAGTGTCGAGCAAATTGGAAACAGAGCAGACCGTATGGAGATTGGAACTGAGGAGCTTTACTTAT
ATTCCAGTACTGATATTGAGGATATACTTGGAAAAATTCAGCATCTCTCCCCCCGTGCTCTGATTATTGATTCAATTCAAACAGTTTATCTGAAAGGAGT
TGCTGGAAGTGCTGGAGGACTGTCACAGGTTAAGGAATGCACATCAGCCCTGTTGCGTTTTGCGAAAACAACTAACATCCCAATACTTTTGATTGGGCAT
GTGAATAAATCTGGAGATATTGCAGGGCCTCGTGTATTGGAGCACATTGTTGATGTTGTCTTATATATGGAAGGGGAGAAGTACTCGTCTCATCGGTTGC
TTCGACCTGTGAAGAATCGTTTTGGGTCCACAGATGAGCTTGGAGTTTTTGAAATGTCACAGTTGGGTCTGGCAGTTGTTTCCAATCCAAGTGAGATATT
CTTAACTGAGCAGCACTCAGATTCAGATTTTTTAGCTGGGCTAGCTGTTGCTGTAATAATGGATGGATCTCGAAGTTTCCTTATTGAAATTCAGGCTCTG
TGTGTCTCTGGTTCATCAGTTTCAAGGCACATTAATGGAATCCAATCAAGCCGAGCTGACATGATCATATCTGTTCTTATAAAGCAAGCTGGTTTAATGC
TCCAAGAGAATGCCATCTTTTTGAATGTTGTTAGTGGGGTAATGCTGACAGAGACTGCTGGTGATGTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTT
GGAATTTCCCATTCCCAATAACATTGCATTCATCGGAGAAATTGGCCTTGGTGGCGAGCTTCGCGCAGTACCCAGGATGGAGAAAAGAGTACATACTGTC
GCGAAACTGGGATATAAAATGTGCGTAATCCCAAAATCAGCTGAAAAATCTCTTGCAAATCTAGGTTTCCAAGGGATGAAAATTGTTGGGTGCAAGAATC
TAAAAGAAGTCATCAACGCTGTATTCAAGGCTTGA
AA sequence
>Potri.001G191200.4 pacid=42789329 polypeptide=Potri.001G191200.4.p locus=Potri.001G191200 ID=Potri.001G191200.4.v4.1 annot-version=v4.1
MQTTAMKVIRSFYTFKNRFLLKPNPIFLSRHFHLTTSPFLSKESGLAVHSSANDPIPIDSSKNAPLVWSVFDPISDGTVTQSGASSSAEFRESELRLSSF
DEEVDGLAGENLIKREKTQMGLPSNRNEIEDLKKEKRYVGVKKGSSVNGAVGSGDRAVYRTKGKSKTSWVCEICGFTSGQWWGSCRSCNEVGTMKQFFEA
KIGSGNKVSGIEASENAVRSWLPQKPGELRPLRLTDVNRGMNMLNWRIPLSGLFGSEVERVLGGGLVPGSLVLVGGDPGVGKSTLLLQVAAIIADSEDPG
GSAPVVYVSGEESVEQIGNRADRMEIGTEELYLYSSTDIEDILGKIQHLSPRALIIDSIQTVYLKGVAGSAGGLSQVKECTSALLRFAKTTNIPILLIGH
VNKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRLLRPVKNRFGSTDELGVFEMSQLGLAVVSNPSEIFLTEQHSDSDFLAGLAVAVIMDGSRSFLIEIQAL
CVSGSSVSRHINGIQSSRADMIISVLIKQAGLMLQENAIFLNVVSGVMLTETAGDVAIAAAICSSFLEFPIPNNIAFIGEIGLGGELRAVPRMEKRVHTV
AKLGYKMCVIPKSAEKSLANLGFQGMKIVGCKNLKEVINAVFKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50340 ATP-dependent peptidases;nucle... Potri.001G191200
[exp]
0 1
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Potri.012G022700
[exp]
1.41 0.7932
AT4G16700 PSD1 phosphatidylserine decarboxyla... Potri.003G078300
[exp]
8.48 0.7411
AT4G03250 HD Homeodomain-like superfamily p... Potri.009G071700
[exp]
10.67 0.7680
AT3G23780 NRPE2, DMS2, DR... DEFECTIVE IN MERISTEM SILENCIN... Potri.018G019100
[exp]
11.74 0.7437
AT1G49180 protein kinase family protein ... Potri.019G007200
[exp]
23.87 0.7248
Potri.018G020301
[exp]
24.04 0.7211
Potri.003G044301
[exp]
36.02 0.7308
AT3G14205 Phosphoinositide phosphatase f... Potri.001G163900
[exp]
36.87 0.7223
AT3G50160 Plant protein of unknown funct... Potri.001G333000
[exp]
41.89 0.7380
AT1G55140 Ribonuclease III family protei... Potri.003G038400
[exp]
41.95 0.7193

Potri.001G191200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.