Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52080 348 / 4e-112 AR791 actin binding protein family (.1) AT3G25690 230 / 1e-64 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT2G36650 66 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G047200 [exp] 900 / 0 AT1G52080 348 / 3e-112 actin binding protein family (.1) Potri.010G130800 [exp] 217 / 4e-60 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.005G098400 [exp] 90 / 9e-19 AT2G36650 142 / 4e-38 unknown protein Potri.001G460300 [exp] 76 / 5e-14 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 74 / 3e-13 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 43 / 0.0006 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025846 [exp] 490 / 4e-166 AT1G52080 337 / 4e-108 actin binding protein family (.1) Lus10038254 [exp] 488 / 2e-165 AT1G52080 333 / 2e-106 actin binding protein family (.1) Lus10034264 [exp] 218 / 3e-60 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034382 [exp] 218 / 3e-60 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10023883 [exp] 60 / 3e-09 AT2G36650 103 / 1e-24 unknown protein Lus10014389 [exp] 59 / 5e-09 AT2G36650 95 / 5e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G191300.5 pacid=42788354 polypeptide=Potri.001G191300.5.p locus=Potri.001G191300 ID=Potri.001G191300.5.v4.1 annot-version=v4.1 ATGTGGATTCATAAGTTGACTTGTATCATGGTAAAAGATAAAAGTGACATAAGGCCTGTTTTAATCAAATTTGGGGTGGCTTTAGCACTCTCTTCTGCTG GATTTCTCCTTGCACGCTTGAAAATCAACATGAATAAGTCTTCCCAGCTTCCTTGCTCCCCACGCTCTTCAGATCATGGTAGTGAGGTTGACGTTGGGGG GGAAAGAACTTGGCACGGAGACGATCTTCAAGTGAAGAATAGAACATCGAGTTCTGGCAGTGTCGCTTCAATTTCAGCAGAAAGATATGATGACTCATGC GTGCTGAATGTTGCTGTTCATAATTCCAAGGTTTTGTCTCCAAGCAGTAGACACAGTGGGGATAAAGATGGGTATCTCTTGACTGAATTCAATGATCTTG TGAAGGAATTGGACTTTACTGCCAATAATTCTGAGACATCCAAGAAAGAAGAAACAATTATATCAGATGTGGAAACTCCAAGATCCTTCGAAAGTGTGGA AAAGGTCGATTATGAGCAAGATATCAGGCATCTGAAGAACATGGTTAGAATGCTTCGAGAGAGGGAAAGAAACCTTGAGGTCCAAATGCTTGAGTTTTAT GGCCTAAAAGAGCAAGAAGCAGCTGTGATGGAATTGCAAAACCGTTTGAAAATAAACAACATGGAGGCTAAGTTGTTTGCTCTGAAAATTGAGTCCTTGA GGGCTGATAACAGAAGACTGCAAGCTCAAGTGGTGGATCATGCGAAAGTTGTTGCCGAGCTTGATGCTGCCAGGTCAAAACTTGAACTGGTGAAGAAAAA ACTAAGGTCTGAAGCAGAGCAGAACAAAGAACAGATATTGTCCCTTAAAAAGAGAGTTTCTAGGTTGCAAGAGCAGGAACTCATGTCTGCTGAAACTGAT TCAGATATTAAAATGAAGTTGCAAAGGCTGAAGGATTTGGAGATTGAGGCAGAAGAGTTGAGGAAATCTAACTCCAGATTGCATCTAGAAAACTCTGAAT TGTTTTCTCAACTGGAGTCCACCCAAATCCTTGCTAATTCCATTCTGGAGGATCCAGAGACAGAAACATTAAGGAAGCAGGGCAATCGGTTAAGGCAGGA AAATGAGGACTTGGCAAAGGAAGTTGAGCAACTCCAAGCAGACCGGTGCAGTGATGTTGAAGAATTAGTCTATCTTCGATGGGTAAATGCTTGCTTGCGA TATGAAATGCGCAATTTTCAGCCCCCTCATGGTAAAACTGTTGCAAGAGACCTTAGTAAGTCTCTAAGCCCTAGGTCTGAGATGAAAGCAAAACAGCTCA TACTTGAATTTGCAAATACTGAAGGAATGGCGGAGAAGGGGATCAACATAATGGAGTTTGAACCTGATCACTGGTCATCCTCCCAGGCCTCCTATATCAC AGACGCAGGAGAACTTGATGATCCTCTATCACCAAAAACGAGCCACTCAGGGAAAACCAAAATGTTCCACAAGCTTAGGAAACTTTTATTGGGAAAGGAG ACTCATAATCACATTCATGGATCTTCAGGTGACAGAACTGGAGTGACAGGAGATTTTGATTCTCCAAATGGCAGTTTAAGTGTTTCAACACCAACAGACG CCACAAGTGATTTGCAATCTACTGGAGGTCAAACTCCATCCTTCTATTCATCCAGGCATTCGTTTAGACATTCCATGGATATCCAAAGAATCAGCAGGAG TCTGGAGAACAGTCAGAGATTTAGGGAGGTAGGATCGTCTAATGGGCATATGAGATTTTCATCAGGTAGAACTAGCGATTTGTCACTTGACAATTTACTG GATCAAGACTTGCATTCTATTGAGAAATCCGAGATGGCAAAATTTGCTGATGTTTTGAAGGACTCCGGAGGTAGAGCGGGAAATGGCAATAGGATGGACA AGTTGCACAGAAAATCAGTATCAATCGGCTCATTTGAGGCTTTCCGTAGCTCCTCTTCGAAATAA
AA sequence Show only first row Show all	>Potri.001G191300.5 pacid=42788354 polypeptide=Potri.001G191300.5.p locus=Potri.001G191300 ID=Potri.001G191300.5.v4.1 annot-version=v4.1 MWIHKLTCIMVKDKSDIRPVLIKFGVALALSSAGFLLARLKINMNKSSQLPCSPRSSDHGSEVDVGGERTWHGDDLQVKNRTSSSGSVASISAERYDDSC VLNVAVHNSKVLSPSSRHSGDKDGYLLTEFNDLVKELDFTANNSETSKKEETIISDVETPRSFESVEKVDYEQDIRHLKNMVRMLRERERNLEVQMLEFY GLKEQEAAVMELQNRLKINNMEAKLFALKIESLRADNRRLQAQVVDHAKVVAELDAARSKLELVKKKLRSEAEQNKEQILSLKKRVSRLQEQELMSAETD SDIKMKLQRLKDLEIEAEELRKSNSRLHLENSELFSQLESTQILANSILEDPETETLRKQGNRLRQENEDLAKEVEQLQADRCSDVEELVYLRWVNACLR YEMRNFQPPHGKTVARDLSKSLSPRSEMKAKQLILEFANTEGMAEKGINIMEFEPDHWSSSQASYITDAGELDDPLSPKTSHSGKTKMFHKLRKLLLGKE THNHIHGSSGDRTGVTGDFDSPNGSLSVSTPTDATSDLQSTGGQTPSFYSSRHSFRHSMDIQRISRSLENSQRFREVGSSNGHMRFSSGRTSDLSLDNLL DQDLHSIEKSEMAKFADVLKDSGGRAGNGNRMDKLHRKSVSIGSFEAFRSSSSK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52080		AR791	actin binding protein family (...		Potri.001G191300 [exp]	0	1
					Potri.009G003650 [exp]	1.00	0.8490
AT5G24870			RING/U-box superfamily protein...		Potri.018G005600 [exp]	1.41	0.8195
AT1G08315			ARM repeat superfamily protein...		Potri.003G195400 [exp]	1.73	0.8173
AT3G30390			Transmembrane amino acid trans...		Potri.017G106300 [exp]	6.24	0.7390
AT5G20260			Exostosin family protein (.1)		Potri.006G064900 [exp]	6.48	0.7954
AT4G32190			Myosin heavy chain-related pro...		Potri.006G255800 [exp]	7.74	0.7590
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.001G137200 [exp]	9.48	0.7711	CEO1.2
AT1G56090			Tetratricopeptide repeat (TPR)...		Potri.005G097300 [exp]	10.39	0.7637
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	11.48	0.7976	SHL1.1
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	11.83	0.7932	Pt-ALA5.2

Compare expression of checked genes

Potri.001G191300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.