Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16380 369 / 1e-121 PAB6 poly(A) binding protein 6 (.1) AT4G34110 330 / 1e-105 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G71770 332 / 2e-105 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G36660 325 / 5e-104 PAB7 poly(A) binding protein 7 (.1) AT1G49760 314 / 5e-99 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G22760 311 / 6e-98 PAB3 poly(A) binding protein 3 (.1) AT2G23350 290 / 6e-90 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G34140 255 / 3e-79 PAB1 poly(A) binding protein 1 (.1) AT5G19350 99 / 4e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52150 94 / 3e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304000 [exp] 328 / 9e-105 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.005G198500 [exp] 326 / 1e-103 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 325 / 2e-103 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.014G025400 [exp] 324 / 7e-103 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 323 / 1e-102 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 308 / 7e-97 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G340800 [exp] 97 / 4e-22 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G054400 [exp] 97 / 2e-21 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G065900 [exp] 89 / 1e-19 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014392 [exp] 341 / 1e-109 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 337 / 5e-108 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10002835 [exp] 328 / 2e-104 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027733 [exp] 328 / 3e-104 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10027886 [exp] 324 / 6e-103 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 324 / 7e-103 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 323 / 1e-102 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10035556 [exp] 323 / 2e-98 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021396 [exp] 297 / 2e-93 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 93 / 3e-20 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G191500.4 pacid=42788444 polypeptide=Potri.001G191500.4.p locus=Potri.001G191500 ID=Potri.001G191500.4.v4.1 annot-version=v4.1 ATGACGGCGGCGGTGGCGCCGTGGAAGCAACAAGTACTACAGAGGGGAGCGTCGCTGTACGTGGGTGACTTGGACCCGGAAGTAACAGAAACGGACTTGA GAGCTGCGTTTTACCATGTGGGTCCCATTTCCTCCCTCAGACTCTGCCGTTGTCGTCTCACCGGAAAGTCTCTCTGTTACGCCTATGTCAACTTATACTC TCATGCTCAAGCATCTAGAGCTTTGGGTCTTCTAAATCACACTAACTTGAAGGGAAAACCCATGAGGATAATGTGGTGTCAGAGGGACCCTTTTGCAAGA AAGACTGGTTTTGCCAATCTCTTTGTAAAGAATCTAGACTTTTCGATCAGCAGCTCTTGCTTGGAGAGCATCTTTAGCAAGTATGGGACAATACTTTCTT GCAAGGTGGCTGGAGAAAACGGAAGGAGTAAGGGCTTTGGGTTTGTTCAGTTTGAGTCTCAGGATTCTGCTCTGGCTGCTCAAACGGCTCTCCATGATAC TATGCTGGGTGGGAAGAAATTGCATGTCTGCAAATTTGTCAAGAAGACTGAAAGGACAGCAGCAGCGCCATGCGAAGTGTTCACCAATCTTTATGTTAAA AATCTAGATGAAACAATAACAGAGGATGGCCTAAAGGATATGTTTTCTGTAGTTGGTGATGTTTCTAGTGTTGCCATCATGATGGATCACGAGGGGAAAT CAAAACATTTTGGATTCGTTAACTTTAAGTCTCCAGATGATGCCAAAAAGGCTGTTGATGTCATGAATGGTTCTGTAATAGGTTCGAAGACTTTGTTTGT GGGAAAGGCTCAAAGGAAATCTGAAAGAACAATGATATTGAAGCAAGAATACAAGGACTTGCACAACAGAAGTACTGAGAAGTTGAGGGCTTCAAATCTG TATGTAAAGAACCTGAATGTAGACATTGATGACAAGAAATTGAAAGAAGTTTTCAGTGCCTATGGGAAGATTCTTTCCGTGAAAGTGATATGCCATAATG ATGGAACTAGCAAACAATTTGGTTTTGTATGTTTTGCAAGCCCTGAAGAAGCAAACAAGGCTTTGGTTGCACTAAATGGAGCCCTCCTTGAAGGAAAGAT TCTTCATGTGGCAAAAGCTCAGTGCAAAAAGGATCACCGCCAGGAATGGCACAACTTCTCTGGACAGAACCAACCTCAGTCTTTCTATCCTTCTAACTGC AATACTGTTTCCTCAGCAATCCACCAACTTCATTTCAATTTTGATCGCTCTCCACATATCCCTTTCCTCCACCATCCAATGTTCTGTCAACATTTTGGTG TTCAGCATCCTTTTATGGCACAAAATTACCAGCAGAAGTTTTCCAAATATATGCCAGTGGCGGAAACGCATCTAGGGAGCACGTTGAACACCAGAGACAA GTCCTACCAACAGCATTCCTCGAAATTTGCAACCTCTAATTTTAGCAACCGAGACCTGAAACTTGGGTCTGCTGGAGATCAAAAGCTTGGTTCCGAAAAG AAGGGTAGCAAGAGAGGAGCAGCTGTAGAAGATATTTCCACTGGATCACCGTCTACCAAAAGTCTTTCTGCAGCTAAATCTACTGACAGTACCGTCATTA ACTTTGGGAGTCTTCTTCAACCCGTTGTAAAGAAACTTCAGGTTTGTGGATTCTCAATTCCCCCCCTTGAAAATATCGCAGTCTAA
AA sequence Show only first row Show all	>Potri.001G191500.4 pacid=42788444 polypeptide=Potri.001G191500.4.p locus=Potri.001G191500 ID=Potri.001G191500.4.v4.1 annot-version=v4.1 MTAAVAPWKQQVLQRGASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGLLNHTNLKGKPMRIMWCQRDPFAR KTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVAGENGRSKGFGFVQFESQDSALAAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFTNLYVK NLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNL YVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNGALLEGKILHVAKAQCKKDHRQEWHNFSGQNQPQSFYPSNC NTVSSAIHQLHFNFDRSPHIPFLHHPMFCQHFGVQHPFMAQNYQQKFSKYMPVAETHLGSTLNTRDKSYQQHSSKFATSNFSNRDLKLGSAGDQKLGSEK KGSKRGAAVEDISTGSPSTKSLSAAKSTDSTVINFGSLLQPVVKKLQVCGFSIPPLENIAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Potri.001G191500 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.010G246650 [exp]	3.74	0.6182
AT3G28370			unknown protein		Potri.001G350100 [exp]	28.84	0.5283
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.006G079800 [exp]	38.96	0.5626
					Potri.002G188801 [exp]	53.44	0.5624
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G029900 [exp]	134.70	0.4899
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	153.49	0.5058
AT2G41050			PQ-loop repeat family protein ...		Potri.006G025100 [exp]	203.37	0.4925

Compare expression of checked genes

Potri.001G191500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.