Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16370 410 / 8e-143 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 337 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 333 / 1e-112 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 332 / 4e-112 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 295 / 1e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 264 / 2e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 256 / 2e-82 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75900 244 / 1e-77 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 242 / 4e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G42990 241 / 9e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144400 [exp] 509 / 0 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 434 / 2e-152 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 366 / 1e-125 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 344 / 5e-117 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.014G160200 [exp] 259 / 2e-83 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 253 / 8e-81 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 252 / 3e-80 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 243 / 3e-77 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G018800 [exp] 243 / 8e-77 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006856 [exp] 427 / 2e-149 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 426 / 9e-149 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 392 / 2e-135 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008635 [exp] 333 / 1e-112 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008639 [exp] 323 / 8e-109 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 322 / 4e-108 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035590 [exp] 309 / 3e-103 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035585 [exp] 285 / 4e-94 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10029958 [exp] 255 / 3e-82 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 249 / 2e-79 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G191600.2 pacid=42789818 polypeptide=Potri.001G191600.2.p locus=Potri.001G191600 ID=Potri.001G191600.2.v4.1 annot-version=v4.1 ATGGCTGTTAATCCTGTTACTCACCCTCAGTCAAAACACATTGCCATTGACTATCACTTTGTCCGAGAACTTATCGCTAATGGCTCTTTGAAAATAGACT TTGTTCCTTCCCATCTGCAGCTTGCTGATTCGCTTACCAAAGGAGTCACCAAGCCTCAGTTTTTCCTCTTTCGAAGCAAGCTTAGCGTTCTCCCTTCTCC CACGCTCACCTTGAAAGGGGCTTTAGCTTTAGCATTGGTCAGTGGTGGCTATGCTCAAGATACTCTTTTTCCAGCCATCATATCATTCGGTGACTCATCG GTGGATGTTGGCAATAATAACCATCTATCCACAATTTTCAAGGCCAATTACCCTCCTTATGGAAGAGATTTTGCCAATCATAAACCCACAGGGAGGTTTT GCAATGGAAAATTAACTATTGACATCACCGCTGAAGCTTTAGGATTTAAGACTTATGCACCAGCATATCTCAGCCCAGAAGCATCAGGAAAAAACCTTCT TATTGGAGTCAACTTTGCATCGGCAGCATCTGGGTATGATGATAAAACTGCCTTTCTGAATAATGCAATTCCATTGTCCCTGCAGTTAAAGCACTTCAAG GAGTATCAGACTAAATTAGTGAAGGTGGCTGGTGGTAGAAAAGCAGCATCAATCATCAAAGACGCATTATACATCTTGAGTGCAGGCACCGCTGATTTCT TTCAGAACTACTATGCAACCCTTCTCTTTGTTAAGAACCTGTATAGTTCCGGGGCAAGGAAACTTGGGGTAACTTCACTCCCGCCATTGGGTTGCGTTCC TGAAGCCCGAAACTTTTTCGGATATCGTGGAAATGACTGTGTCTCCTGGGTCAATACTGTTGCACGGCAATTTAATAAAAATCTCAACTTAGCTGCAGAT AATCTCCGAAAGCAACTTCCGGGTCTAAAGAAAGTTGTCTTCGATATCTACAAGCCATTGGAGGATCTGGTTAAATCTCCTCTAACTTATGGTTTTGTCG GAGCAAGAAGAGGATGCTGCCAGACGAGGACTGCTGGGAAAATATCAGTATTTTGCAATCCAAGGTTGCCAGGAACTTGCCCCAATGCCACTCAGTTTGT GTTTTGGGACAGTGTCCATCCTTCTCAGGCTGCTAATCAGGTTCTTGCTGATGCAATTCTTTTTCAAGGTGTCTCACTATTTGGATGA
AA sequence Show only first row Show all	>Potri.001G191600.2 pacid=42789818 polypeptide=Potri.001G191600.2.p locus=Potri.001G191600 ID=Potri.001G191600.2.v4.1 annot-version=v4.1 MAVNPVTHPQSKHIAIDYHFVRELIANGSLKIDFVPSHLQLADSLTKGVTKPQFFLFRSKLSVLPSPTLTLKGALALALVSGGYAQDTLFPAIISFGDSS VDVGNNNHLSTIFKANYPPYGRDFANHKPTGRFCNGKLTIDITAEALGFKTYAPAYLSPEASGKNLLIGVNFASAASGYDDKTAFLNNAIPLSLQLKHFK EYQTKLVKVAGGRKAASIIKDALYILSAGTADFFQNYYATLLFVKNLYSSGARKLGVTSLPPLGCVPEARNFFGYRGNDCVSWVNTVARQFNKNLNLAAD NLRKQLPGLKKVVFDIYKPLEDLVKSPLTYGFVGARRGCCQTRTAGKISVFCNPRLPGTCPNATQFVFWDSVHPSQAANQVLADAILFQGVSLFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191600 [exp]	0	1
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.006G144400 [exp]	1.00	0.9971
					Potri.001G284032 [exp]	2.00	0.9937
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Potri.008G121200 [exp]	2.23	0.9849
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009000 [exp]	11.22	0.9741
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.001G137800 [exp]	12.40	0.9815
AT4G18250			receptor serine/threonine kina...		Potri.017G008100 [exp]	14.14	0.9676
					Potri.018G115601 [exp]	14.49	0.9752
AT3G16660			Pollen Ole e 1 allergen and ex...		Potri.010G012400 [exp]	14.69	0.9769
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.013G108300 [exp]	18.73	0.9577
AT3G63095			Tetratricopeptide repeat (TPR)...		Potri.014G139100 [exp]	18.89	0.9717

Compare expression of checked genes

Potri.001G191600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.