Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15800 515 / 0 Glycosyl hydrolase superfamily protein (.1) AT2G26600 449 / 9e-157 Glycosyl hydrolase superfamily protein (.1.2) AT2G27500 330 / 5e-110 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G32860 324 / 3e-107 Glycosyl hydrolase superfamily protein (.1) AT4G18340 309 / 8e-102 Glycosyl hydrolase superfamily protein (.1) AT2G16230 308 / 3e-100 O-Glycosyl hydrolases family 17 protein (.1) AT5G42100 306 / 3e-100 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G34480 298 / 2e-96 O-Glycosyl hydrolases family 17 protein (.1) AT1G30080 294 / 7e-96 Glycosyl hydrolase superfamily protein (.1) AT4G26830 287 / 2e-92 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032600 [exp] 617 / 0 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 491 / 1e-172 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.018G129500 [exp] 486 / 2e-171 AT2G26600 543 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Potri.001G449100 [exp] 335 / 9e-112 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 332 / 5e-111 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G152400 [exp] 333 / 6e-111 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.004G202400 [exp] 327 / 6e-109 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 323 / 1e-107 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 323 / 2e-107 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011482 [exp] 543 / 0 AT3G15800 540 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038099 [exp] 476 / 7e-167 AT2G26600 547 / 0.0 Glycosyl hydrolase superfamily protein (.1.2) Lus10023120 [exp] 417 / 8e-146 AT3G15800 409 / 1e-143 Glycosyl hydrolase superfamily protein (.1) Lus10006659 [exp] 381 / 3e-131 AT2G26600 437 / 5e-156 Glycosyl hydrolase superfamily protein (.1.2) Lus10017344 [exp] 333 / 3e-111 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 329 / 3e-110 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 318 / 3e-105 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 315 / 3e-104 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 315 / 1e-103 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10008277 [exp] 313 / 3e-103 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.001G192200.1 pacid=42793110 polypeptide=Potri.001G192200.1.p locus=Potri.001G192200 ID=Potri.001G192200.1.v4.1 annot-version=v4.1 ATGGCATGCTTCAAGAACAAGAATTGCATTGTCATCCAAAGGGTTTATCTTTTTGACACTTTTGAGCTACAAAAAGGTTGGGCCATACCCACTTCTTTTC TACAAATGGAGTGCACTTTCCTTGATCATCTTTCCACCAGAATTATGGGTTTCTATTCTTTCTTTCTATGGCTCCTCCTCCTCTTCTCTGTCATTTCTTC CAATGTTTTCACAGTGTACGCATTCAAGGGAACATACGGAGTAAACTATGGTAGGATAGCAGATAATTTACCTTCACCACGCAGCGTGGTGACGCTTCTG AAAGCAGCCAAGATTAAAAATACCAGAATCTACGACGCTGACCATGAAGTCCTCAAGGCCTTCAAAGGCTCTGGCATTGGAATAATAGTTGGACTTGGCA ATGGGTATTTAAAAGAAATAGCTGTAGGAGAGGATCGCGCCATGAATTGGATAAAGGAAAATGTGCAGCCATTCCTTCCTGGAACAAATATTGCTGGAAT AGCAGTGGGAAACGAGATCTTGGGGGGCGATGACCATGAATTATGGGAGGTTTTACTGCCTGCGGTTAAAAATGTTTATGATGCGCTTCGAAGGCTGGAT TTGACGAAGGTTGTCGAGGTTTCAAGCCCACATTCAGAGGCCGTCTTCACCAATTCCTTCCCACCATCGTCGTGCGTTTTCAGGGAAGATGTTTCTATAT ACATGAAACCACTGTTGCAGTTCTTCTCACAGATTGGCTCTCCTTTTTACATAAATGCCTACCCTTTTCTAGCCTACAAGAGTGATCCTGAGCATATTGA CATAAACTATGCTCTTTTCAAATCAAATAAGGGAATTCTTGATGCAAAGACTAATCTGCATTATGATAACATGTTTGAGGCTCAGGTTGATGCAGCTTAC GCTGCATTAGACAAGGCTGGGTTTCCCAAGATGGAAGTCATCGTTTCTGAAACAGGTTGGGCTTCTCGCGGGGATGACAATGAAGCAGGTGCCAGTTTAG AAAATGCCAGGACTTACAATCGTAATCTGCGTAAACGGCTAGCTAAAAAGAAGGGAACACCATACAGACCAAAGTTTGTGGCAAAAGCGTATATTTTTGC ACTGTTCAACGAAAATTTGAAGCCCGGGCCTACTTCTGAGAGGAACTTTGGATTGTTTAAACCTGATGGAAGCATTTCTTATGATATCGGATTCACCGGG CTTAAGGAATCCTCTGGAGTTTCATCTTTTATTCATTTCAAGGTTATTGGAGCATATGGTTGGTTGGGGTCATCCTGTGCATTGCTTCTTACAACTTGTA TCACACTTGTGCTCCTAATCTCAGCTTCTTGA
AA sequence Show only first row Show all	>Potri.001G192200.1 pacid=42793110 polypeptide=Potri.001G192200.1.p locus=Potri.001G192200 ID=Potri.001G192200.1.v4.1 annot-version=v4.1 MACFKNKNCIVIQRVYLFDTFELQKGWAIPTSFLQMECTFLDHLSTRIMGFYSFFLWLLLLFSVISSNVFTVYAFKGTYGVNYGRIADNLPSPRSVVTLL KAAKIKNTRIYDADHEVLKAFKGSGIGIIVGLGNGYLKEIAVGEDRAMNWIKENVQPFLPGTNIAGIAVGNEILGGDDHELWEVLLPAVKNVYDALRRLD LTKVVEVSSPHSEAVFTNSFPPSSCVFREDVSIYMKPLLQFFSQIGSPFYINAYPFLAYKSDPEHIDINYALFKSNKGILDAKTNLHYDNMFEAQVDAAY AALDKAGFPKMEVIVSETGWASRGDDNEAGASLENARTYNRNLRKRLAKKKGTPYRPKFVAKAYIFALFNENLKPGPTSERNFGLFKPDGSISYDIGFTG LKESSGVSSFIHFKVIGAYGWLGSSCALLLTTCITLVLLISAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15800			Glycosyl hydrolase superfamily...		Potri.001G192200 [exp]	0	1
AT3G17380			TRAF-like family protein (.1)		Potri.001G130700 [exp]	1.00	0.9859
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340500 [exp]	1.41	0.9849
					Potri.008G018000 [exp]	2.23	0.9777
AT3G15800			Glycosyl hydrolase superfamily...		Potri.003G032600 [exp]	4.47	0.9818
AT1G47271			Cystathionine beta-synthase (C...		Potri.002G034800 [exp]	4.58	0.9517
AT3G05620			Plant invertase/pectin methyle...		Potri.005G022700 [exp]	5.29	0.9677
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	6.00	0.9723
AT3G18670			Ankyrin repeat family protein ...		Potri.007G110000 [exp]	6.24	0.9631
AT1G54400			HSP20-like chaperones superfam...		Potri.019G037700 [exp]	6.32	0.9658
AT2G41200			unknown protein		Potri.006G038600 [exp]	7.74	0.9527

Compare expression of checked genes

Potri.001G192200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.