Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PLD1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52570 1412 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT3G15730 1406 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT5G25370 1028 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT2G42010 739 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 722 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 706 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 704 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 694 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G35790 657 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G55180 584 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032800 [exp] 1573 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1) Potri.018G131200 [exp] 1256 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 1147 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.014G074700 [exp] 724 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 716 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.002G016100 [exp] 709 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 705 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 705 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.005G246000 [exp] 702 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039806 [exp] 1476 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10018575 [exp] 1474 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10033706 [exp] 1462 / 0 AT3G15730 1382 / 0.0 phospholipase D alpha 1 (.1) Lus10031634 [exp] 1461 / 0 AT3G15730 1380 / 0.0 phospholipase D alpha 1 (.1) Lus10041787 [exp] 1103 / 0 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10006819 [exp] 723 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 719 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 694 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 693 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 692 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Potri.001G193000.1 pacid=42793223 polypeptide=Potri.001G193000.1.p locus=Potri.001G193000 ID=Potri.001G193000.1.v4.1 annot-version=v4.1 ATGGCGCAGATTTTGTTGCACGGGAATTTACATGTGACGATCTATGAGGTGGATAAGATCGGGGAGGGTGGTGGTCATGGCTTCTTCCACAAGCTCGTGG GGAAAGTTGGGGAGAAAGTTGGTATTGGCAACGGAATCAGCAGACTCTATGCAACTATTGATCTAGAAAAGGCTAGAGTTGGGAGGACCAGAATCCTTGA AAATGAAGCAACCAACCCAAGGTGGTATGAGTCTTTTCACATTTACTGTGCTCATATGGCCTCAAATGTTATTTTCACAGTCAAGGATGTTAATCCAATT GGGGCAACCTTGATCGGAAGAGCATATATACCTGTTGAAGAAATCCTAGATGGGGAAGAAATAGATAGATGGGTTGAGATATTGGATGGAGACAAAAATC CAATTCGTGCAGGTTCCAAGATCCATGTGAAGCTACAATACTTTGATATCACAAACGACCATAATTGGGGCCGTGGCATCAGAGGTTCAAAATATCCTGG AGTACCTTATACATTCTACTCTCAGAGACAAGGGTGTAGGGTTTCTCTGTACCAAGATGCTCATATACCAGACAAATTTATTCCAAAAATCCCTCTTGCT TCAGGAGAGTACTATGAGCCCCACAGATGTTGGGAAGATGTCTTTGATGCAATCACAAATGCAAAGCACTTGATCTACATCACTGGCTGGTCTGTTTATA CTGAAATCAGTCTGGTAAGGGATTCAAGGAGGCCAAAGCCTGGCGGAGACATCACTCTGGGTGAGCTGCTGAAGAAGAAGGCAAGTGAAGGTGTTAGGGT TCTTATGCTTATTTGGGATGACAGAACCTCTGTTGGTTTGCTGAAAAGGGATGGACTGATGGCCACCCATGATGAAGAAACTGAGCACTACTTCCAGAAT ACGGATGTGCACTGTATCTTGTGTCCTCGAAATCCTGATGATGGTGGAAGCATTGTTCAGGATCTGCAAATATCTACTATGTTCACTCATCACCAGAAGA TTGTGGTAGTGGACAGTGCAATGCCTAATGGAGATTCCCAGCGGAGGAGAATTGTTAGTTATATTGGGGGGATTGATCTTTGTGATGGGAGATACGATAC CCCCTTCCATTCCCTTTTTAGGACATTGGACACTGCTCACCATGATGATTTTCACCAGCCCAACTTTACCGGTGCGTCAATTCAAAAAGGTGGTCCCAGA GAACCTTGGCATGACATCCATTCCCGGCTTGAGGGACCTATTGCTTGGGATGTCTTGTTTAATTTTGAACAGAGATGGAAGAAGCAAGGTGGTAAAGATT TACTTGTTCAGCTGAGAGAGTTGGAAGATGTCATCATTCCACCTTCTCCAGTTACGTACCCTGATGATCATGAGACATGGAATGTGCAGTTATTTAGATC CATTGATGGTGGGGCTGCATTTGGTTTCCCGGAGACACCCGAAGATGCAGCCAAAGCTGGGCTTGTCAGCGGAAAGGATAATATCATTGATCGAAGCATT CAAGATGCCTACATTAATGCTATTCGGCGTGCGAAGAATTTCATCTATATTGAGAATCAGTATTTTCTTGGGAGTTCTTTTTGCTGGAGTGCTGATGGTA TTAAGCCGGAGGACATTAATGCTTTGCATCTAATTCCAAAAGAGCTTTCACTTAAGATAGTTAGCAAGATTGAGGCAGGGGAGAGGTTCACTGTTTATGT TGTTGTTCCAATGTGGCCAGAGGGAATACCAGAGAGTGCATCAGTTCAGGCAATATTAGACTGGCAGAGGAGGACAATGGACATGATGTATAAAGATGTC ATTCAGGCTCTCAGAGCCAAGGGGCTTGAAGAAGATCCTCGGAACTACTTGACATTTTTCTGCCTTGGGAATCGTGAGGTGAAGAAAAGTGGAGAATATG AACCTTCAGAAAAACCAGAGCCTGATTCAGATTACATCCGGGCCCAGGAGGCCAGGCGCTTCATGATTTATGTTCATGCAAAGATGATGATTGTTGATGA CGAATACATCATTATTGGGTCTGCCAACATTAATCAGAGATCCATGGATGGTGCCAGGGACTCAGAAATAGCCATGGGAGGATACCAGCCATATCACTTG GCAACCAGACAGCCTGCACGAGGCCAGATCCATGGATTCCGCTTGGGATTATGGTACGAACACCTTGGCATGCTGGATGACACCTTCCTTAAACCAGAAA ATGAAGATTGCATTAGGAAGGTGAACCAGATTGCTGACAAATACTGGGACTTGTATTCCAGTGAGACACTTGAGGGTGATCTACCAGGTCATTTGCTCCG TTACCCCATTGGAATTTCCAGCGAAGGAAATGTTACAGAACTGCCTGGAACAGAGTACTTCCCTGACACAAAGGCTCGTGTTCTCGGTGCCAAATCTGAT TACATGCCTCCCATCCTTACTACTTAA
AA sequence Show only first row Show all	>Potri.001G193000.1 pacid=42793223 polypeptide=Potri.001G193000.1.p locus=Potri.001G193000 ID=Potri.001G193000.1.v4.1 annot-version=v4.1 MAQILLHGNLHVTIYEVDKIGEGGGHGFFHKLVGKVGEKVGIGNGISRLYATIDLEKARVGRTRILENEATNPRWYESFHIYCAHMASNVIFTVKDVNPI GATLIGRAYIPVEEILDGEEIDRWVEILDGDKNPIRAGSKIHVKLQYFDITNDHNWGRGIRGSKYPGVPYTFYSQRQGCRVSLYQDAHIPDKFIPKIPLA SGEYYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDITLGELLKKKASEGVRVLMLIWDDRTSVGLLKRDGLMATHDEETEHYFQN TDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSAMPNGDSQRRRIVSYIGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASIQKGGPR EPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDLLVQLRELEDVIIPPSPVTYPDDHETWNVQLFRSIDGGAAFGFPETPEDAAKAGLVSGKDNIIDRSI QDAYINAIRRAKNFIYIENQYFLGSSFCWSADGIKPEDINALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPESASVQAILDWQRRTMDMMYKDV IQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDSDYIRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHL ATRQPARGQIHGFRLGLWYEHLGMLDDTFLKPENEDCIRKVNQIADKYWDLYSSETLEGDLPGHLLRYPIGISSEGNVTELPGTEYFPDTKARVLGAKSD YMPPILTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.001G193000 [exp]	0	1	PLD1.2
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073616 [exp]	4.12	0.7820
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G075400 [exp]	10.19	0.7453
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	23.55	0.7450
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	26.45	0.7338
AT5G60800			Heavy metal transport/detoxifi...		Potri.009G007600 [exp]	27.98	0.7264
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	31.74	0.7076
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	32.55	0.7235	Pt-NPH4.2
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	34.52	0.7357
AT2G36650			unknown protein		Potri.005G098400 [exp]	38.15	0.6882
AT3G18770			Autophagy-related protein 13 (...		Potri.019G010700 [exp]	38.18	0.7334

Compare expression of checked genes

Potri.001G193000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.