Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20150 159 / 2e-48 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G26660 147 / 1e-43 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G15330 137 / 1e-39 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G45130 122 / 1e-34 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G131500 [exp] 168 / 8e-52 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 166 / 3e-51 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.006G069500 [exp] 163 / 8e-50 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G253400 [exp] 151 / 2e-45 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.002G143900 [exp] 137 / 2e-40 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 129 / 5e-37 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.017G086600 [exp] 118 / 3e-32 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G135950 [exp] 52 / 9e-09 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043272 [exp] 165 / 9e-51 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10030095 [exp] 161 / 3e-49 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002018 [exp] 153 / 4e-46 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10019415 [exp] 156 / 1e-45 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002908 [exp] 150 / 6e-45 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.001G193200.1 pacid=42791454 polypeptide=Potri.001G193200.1.p locus=Potri.001G193200 ID=Potri.001G193200.1.v4.1 annot-version=v4.1 ATGAAGTATCAAAAGAGGCTCCGCGACGAGGTTGAGAGAGTCCTTCCTGAATGGAAACGTCAGTTCATATGTTACAAGGGGCTGAAGAAGCAGTTGAAGC TGATTAATCCTCGGTCGTCAAGGGACAGAAGGATGGGTGATGATCGGTCAGGATTTGCCACAGGCAGATTCTTGGACGTGAATAATAATATCAGGGAGAG AATTGGTTTCACCCGATTATTACATAGTGAACTCAACAAGGTTAATGCGTTTTATTTTGATAAAGAGGAAGATTATGTCATCCGATTGAAGGAGATGCAA CTTAGGGCTGGAAATTTGGACAGTAATGAAGAGAAGTTGCAGGTGCAGAGGGACATATTAAATCTTCACGCAGAGATGGTTTTGCTGCTGCATTACAGTG TCCTTAACTTCACAGGGCTGGTCAAGATAGTGAAGAAGCACAACAAGAGGACAGGCACTTCCTTCCATTTTTCCTCCATGCCTAGGGTTATGCAACGACC ATTCTTCTCCACTGATTTGCTTTACGAACTCATGAGGGAGTGTGAAACAATGCTGGATGGCCTCTTTCTTTCAAAACAACCTTGA
AA sequence Show only first row Show all	>Potri.001G193200.1 pacid=42791454 polypeptide=Potri.001G193200.1.p locus=Potri.001G193200 ID=Potri.001G193200.1.v4.1 annot-version=v4.1 MKYQKRLRDEVERVLPEWKRQFICYKGLKKQLKLINPRSSRDRRMGDDRSGFATGRFLDVNNNIRERIGFTRLLHSELNKVNAFYFDKEEDYVIRLKEMQ LRAGNLDSNEEKLQVQRDILNLHAEMVLLLHYSVLNFTGLVKIVKKHNKRTGTSFHFSSMPRVMQRPFFSTDLLYELMRECETMLDGLFLSKQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.001G193200 [exp]	0	1
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.008G137600 [exp]	9.21	0.9490
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G198100 [exp]	12.44	0.9687
AT1G54630		ACP3	acyl carrier protein 3 (.1.2)		Potri.006G217800 [exp]	18.11	0.9661
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143400 [exp]	18.54	0.9645
					Potri.003G126200 [exp]	22.51	0.9656
AT5G59190			subtilase family protein (.1)		Potri.003G120101 [exp]	23.23	0.9644
AT3G04200			RmlC-like cupins superfamily p...		Potri.010G240500 [exp]	26.53	0.9284
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.014G069500 [exp]	29.59	0.9055
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118700 [exp]	29.69	0.9643
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.001G165000 [exp]	32.04	0.9506

Compare expression of checked genes

Potri.001G193200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.