Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45890 671 / 0 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT1G13770 164 / 1e-44 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT2G31190 159 / 8e-43 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 151 / 1e-39 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT5G01510 132 / 6e-33 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT2G23470 97 / 4e-21 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095700 [exp] 161 / 2e-43 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.004G229500 [exp] 159 / 3e-42 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 153 / 9e-41 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.003G033450 [exp] 106 / 5e-26 AT3G45890 91 / 6e-21 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.007G035300 [exp] 105 / 7e-24 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 100 / 7e-24 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.006G099700 [exp] 94 / 2e-20 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001413 [exp] 693 / 0 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 689 / 0 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 164 / 6e-44 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 162 / 2e-43 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 147 / 2e-38 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10003558 [exp] 144 / 1e-37 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 132 / 2e-33 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 115 / 2e-27 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10016778 [exp] 110 / 3e-25 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10022474 [exp] 108 / 6e-25 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [poplar] [flax] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Potri.001G193300.1 pacid=42792317 polypeptide=Potri.001G193300.1.p locus=Potri.001G193300 ID=Potri.001G193300.1.v4.1 annot-version=v4.1 ATGGATTGCGCTTGCAGACCCTTTTTCCTCTGGGGAACATGGATGTCCACCACCCCTAGAACCACTTCTCCTCCCAACACCATCAGCCTGCCACTTATTA ACAGCAGAAGCTCTACTCCGCCATCGCCACCTCGTCTCAAGGCTACCACTTCTCCTTTCAATTTTTCCGTGGACTTGCCAAGTGGCGGAAACAACAATCA CGGTGGCCGGAACAGCAACAATAACAATAAAGGGTGGTGGTGGCGGCGGTGGTGGAATGATGGCAGTGACTCTTCCAATACCTTTTCCCTGTTGTTCTTA TTAAGCTCATCCATTGTGCTGCAATTAGCTTCTTCTGCAGCTGCAAGAACTCAACAAGAAGAGGGAGAGGAGGTTTGGGAAGTTAAAGGGAGCAACCGGG CTAGACTTATTCCTGATTTCTCCAAGGATGAGTTTGTAGTGTCTCCAACATCATCATCGTCACTGTTTTCTGTTAATGATTTATGGTCGCAATGCACAAC CTTGTTCGTGCGCCTAATGCTTCCCCAAGGATTTCCTCGAAGTGTTACCTCTGATTACTTGGATTACTCTCTTTGGCGAGCAGTCCAAGGCATCGCCAGC CAAATTAGCGGCGTTCTTGCCACCCAGGCATTGCTTTATGCTGTTGGGTTGGGGAAAGGAGCTATCCCAACTGCTGCTGCCATCAATTGGGTGCTAAAGG ATGGAATTGGGTATCTCAGTAAAATCGTATTGTCCAAATATGGACGACATTTTGATGTTCATCCTAAAGGGTGGAGACTGTTTGCTGACCTTTTGGAAAA TGCTGCCTTTGGTTTGGAGATGTTAACGCCTGCGTTTCCTCATCTCTTTGTTTTCATTGGTGCCACTGCTGGAGCTGGACGCTCTGCTGCTGCTCTTATC CAGGCTGCTACAAGAAGCTGTTTTTATGCTGGTTTTGCTGCTCAAAGAAACTTTGCTGAGGTAATTGCCAAGGGTGAAGCTCAAGGAATGGTGAGCAAGT TTATTGGTATAATGCTTGGTATAGCATTGGCTAATTGCATAGGCTCCTCAACACCCCTTGCCCTTGCTTCTTTCAGTGTGGTGACATGGATCCACATGTT CTGCAATCTGAAATCGTATCAATCCATTCAATTAAGGACTTTAAATCCTTATCGTGCAAGTTTAGTTTTTAGCGAGTACCTCCTCAGCGGCCAAGCACCT CCAGTCAAAGAGATCAATGATGAAGAACCACTTTTTCCAGCTGTACCATTTCTTAATATCTACTCTAAGGGCAATGTACAATCAATCGTTCTATCTTCAG AAGCGAGGAATGCAGCTGCTGAAATCGAGCAGAGGCTGCAGCTGGGGTCTAAGCTCAGTGATGTTGTCAACAACAAGGACGATGTGCTTGCATTGTTCAA TTTGTATAGAGATGAAGGCTATATTTTGACTGAGCACAAGGGAAGATTCTGTGTAGTGCTTAAAGAAAGTTCTTCACCACATGACATGCTCAAGTCACTG TTCCAAGTTAATTATTTATACTGGTTGGAGAGAAATGCTGGAATTGAAGCAAGAAGTATCTCTGCTGACTGCAGACCTGAGGGGAGGCTACAAATCTCTC TGGAATATGCCCGACGGGAATTCAACCATGTGAAAAATGATAGTGTATCAATGGGTTGGGTCGCTGATGGACTAATTGCCAGGCCTTCACCAATTAGAGT TTGTCCTGGAAACATAGCCTCTTCAATTGCAAGCTGA
AA sequence Show only first row Show all	>Potri.001G193300.1 pacid=42792317 polypeptide=Potri.001G193300.1.p locus=Potri.001G193300 ID=Potri.001G193300.1.v4.1 annot-version=v4.1 MDCACRPFFLWGTWMSTTPRTTSPPNTISLPLINSRSSTPPSPPRLKATTSPFNFSVDLPSGGNNNHGGRNSNNNNKGWWWRRWWNDGSDSSNTFSLLFL LSSSIVLQLASSAAARTQQEEGEEVWEVKGSNRARLIPDFSKDEFVVSPTSSSSLFSVNDLWSQCTTLFVRLMLPQGFPRSVTSDYLDYSLWRAVQGIAS QISGVLATQALLYAVGLGKGAIPTAAAINWVLKDGIGYLSKIVLSKYGRHFDVHPKGWRLFADLLENAAFGLEMLTPAFPHLFVFIGATAGAGRSAAALI QAATRSCFYAGFAAQRNFAEVIAKGEAQGMVSKFIGIMLGIALANCIGSSTPLALASFSVVTWIHMFCNLKSYQSIQLRTLNPYRASLVFSEYLLSGQAP PVKEINDEEPLFPAVPFLNIYSKGNVQSIVLSSEARNAAAEIEQRLQLGSKLSDVVNNKDDVLALFNLYRDEGYILTEHKGRFCVVLKESSSPHDMLKSL FQVNYLYWLERNAGIEARSISADCRPEGRLQISLEYARREFNHVKNDSVSMGWVADGLIARPSPIRVCPGNIASSIAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.001G193300 [exp]	0	1
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	2.82	0.8808
AT5G07900			Mitochondrial transcription te...		Potri.015G038400 [exp]	4.47	0.8348
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.005G240700 [exp]	8.12	0.8322
AT4G01030			pentatricopeptide (PPR) repeat...		Potri.014G097000 [exp]	11.22	0.8784
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Potri.015G121101 [exp]	17.74	0.8509
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.019G019300 [exp]	20.00	0.8518
AT1G06510			unknown protein		Potri.005G203100 [exp]	20.61	0.8583
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Potri.011G082800 [exp]	23.23	0.8119
AT5G55600			agenet domain-containing prote...		Potri.016G007500 [exp]	27.45	0.8311
AT5G18260			RING/U-box superfamily protein...		Potri.013G060900 [exp]	32.00	0.8395

Compare expression of checked genes

Potri.001G193300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.