Plant FIBer expression Database

Potri.001G193400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19160 517 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G033300
[exp]
806 / 0 AT4G19160 522 / 0.0 unknown protein
Potri.001G027600
[exp]
57 / 1e-08 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038244
[exp]
465 / 4e-162 AT4G19160 375 / 7e-127 unknown protein
Lus10025855
[exp]
375 / 3e-129 AT4G19160 303 / 3e-101 unknown protein
Lus10024153
[exp]
57 / 2e-08 ND 49 / 5e-06
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13371 TPR_9 Tetratricopeptide repeat
Representative CDS sequence
>Potri.001G193400.1 pacid=42790511 polypeptide=Potri.001G193400.1.p locus=Potri.001G193400 ID=Potri.001G193400.1.v4.1 annot-version=v4.1
ATGCTGTGTGATTCATTCATCACTGCCGTTACTTCATCAACAGCAACAACCATGCCAGCAGCAGCAGCAGCAGCTTCTTCTCATGTTTTGCCCATCAGGT
ATGATCATGATCAACATCGGCGGTGGAGGAGAAGAAATGGGACTTCTATTGTTTCAGCTTCAGCTTCCCCTCTTTCAATCAATCAGATGAACATGGACTC
TTCTTCCCGTCGTCTCAAAAATTATCAGGAGGTTGTCAAGTCTGCGAGGGACAAGTTTACCCAGGAAATCTCCTTCCAATCCAAGGACAAAGACATTTCT
CTTGCTAAGGCTTTGCTATACATTGCAGCAGAAGATGAGGCATTTATCTCTCTCAATCAAGAGATGGATGCTTGCTCACTCCTGAACGAGAGGAGAGATG
TTTCAGCTGCATTGAATTCCCAGGAGTGGGATTGTGTGGAGCAGATGCCTTTAGCTGGAAAGACTACGAGTCAATGGGTCAGTGAGTTGGACAACATTAC
CAAGGATGTCGAAGCAGAGCTAGTTTCAAGAGACATAGGTTGCCATTTGGTTGAACTTTTGGATGCAGTGAATTTAGTTCTTTTTGAGTTGAGAGGCTTC
AAAAGATCACCTGTTGTTGTAGATTCCAAGTATTCATACTTGCACACAGTATTAAGCACCAGATGTGGCAGTGCAATTTTGCTTAGTATAATTTACATTG
AAGTTTGTAGAAGACTTGGTCTGACCATTGTGGGATCTCGAGTTGGGGAAGATTTTTTGATATGGCCCCAAATGGGGAACCCGGAGGAGCTCTTCAAGGT
AACTTCAGGACACAGCTTGTTTGCAATTGTCAATGGAAGGTGTGTTGAGGACCCTAGATCAAAGGCATCAGATTTGACTGGAAACTCTCTTTTGGGGCTC
GAGATAGCTACGAAACGAGACATTATTGGCATTGCTCTGGCCAATTTGATTAGGCTTCACTGGAAACGTGCTTCGAGATCAAATCCTGGTTTGATGCTGA
CTTCACCACTTAGGCGTGCTCCTAACACTGATGAAAAACTTAACAGGATCCATAATTCAAGTATTCCTTTGCTTCGGCCTCATGATCTTAGGCTGGCTAT
CATGGCTTCAGAAAGATCGTTGATTCTGCAACCACATAATTGGGCTTTGAGGAGAGACCATGGCATGATGTTGTACTATAATAGGAAATATGGTCAGGCG
GTGCAAGAGCTTAGCATTTGCATGGCGTTTGCTCCAGAAGAAGAGGCCAAGGTCCTAGAAGCATTTGTAGAGAAATTGCACCTGTTGCGGCTTGAATCGT
CGTGGAAGTCTTTGGGACACACAGGTCAACTAACAGTTCCTTGA
AA sequence
>Potri.001G193400.1 pacid=42790511 polypeptide=Potri.001G193400.1.p locus=Potri.001G193400 ID=Potri.001G193400.1.v4.1 annot-version=v4.1
MLCDSFITAVTSSTATTMPAAAAAASSHVLPIRYDHDQHRRWRRRNGTSIVSASASPLSINQMNMDSSSRRLKNYQEVVKSARDKFTQEISFQSKDKDIS
LAKALLYIAAEDEAFISLNQEMDACSLLNERRDVSAALNSQEWDCVEQMPLAGKTTSQWVSELDNITKDVEAELVSRDIGCHLVELLDAVNLVLFELRGF
KRSPVVVDSKYSYLHTVLSTRCGSAILLSIIYIEVCRRLGLTIVGSRVGEDFLIWPQMGNPEELFKVTSGHSLFAIVNGRCVEDPRSKASDLTGNSLLGL
EIATKRDIIGIALANLIRLHWKRASRSNPGLMLTSPLRRAPNTDEKLNRIHNSSIPLLRPHDLRLAIMASERSLILQPHNWALRRDHGMMLYYNRKYGQA
VQELSICMAFAPEEEAKVLEAFVEKLHLLRLESSWKSLGHTGQLTVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G19160 unknown protein Potri.001G193400
[exp]
0 1
AT4G33580 ATBCA5 A. THALIANA BETA CARBONIC ANHY... Potri.005G156600
[exp]
3.00 0.8969
AT1G11300 protein serine/threonine kinas... Potri.004G027533
[exp]
4.47 0.9104
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Potri.005G192000
[exp]
4.89 0.8969
AT1G18870 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNT... Potri.012G070000
[exp]
7.41 0.8921
AT1G11330 S-locus lectin protein kinase ... Potri.004G027666
[exp]
8.06 0.8858
AT4G14880 OLD3, CYTACS1, ... ONSET OF LEAF DEATH 3, O-acety... Potri.013G035200
[exp]
9.21 0.8808
AT4G38470 STY46 serine/threonine/tyrosine kina... Potri.009G139400
[exp]
9.89 0.8472
AT4G21120 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTE... Potri.015G133100
[exp]
10.39 0.8996 AAT1.2,PtrCAT12
AT5G38280 PR5K PR5-like receptor kinase (.1) Potri.017G009100
[exp]
10.48 0.8951
AT4G31860 Protein phosphatase 2C family ... Potri.001G043000
[exp]
11.57 0.8405

Potri.001G193400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.