Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62200 183 / 2e-59 Embryo-specific protein 3, (ATS3) (.1) AT2G41475 180 / 3e-58 Embryo-specific protein 3, (ATS3) (.1) AT5G62210 122 / 4e-35 Embryo-specific protein 3, (ATS3) (.1) AT5G07190 101 / 5e-27 ATS3 seed gene 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132700 [exp] 197 / 5e-65 AT5G62200 204 / 1e-67 Embryo-specific protein 3, (ATS3) (.1) Potri.006G069800 [exp] 182 / 5e-59 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1) Potri.018G131800 [exp] 181 / 8e-59 AT2G41475 197 / 5e-65 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130900 [exp] 138 / 1e-41 AT5G62200 154 / 1e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130800 [exp] 135 / 2e-41 AT5G62200 150 / 6e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.015G132900 [exp] 137 / 3e-41 AT5G62200 153 / 4e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.010G214400 [exp] 88 / 3e-22 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1) Potri.003G107100 [exp] 44 / 1e-05 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091100 [exp] 39 / 0.0008 AT4G39730 200 / 2e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027387 [exp] 191 / 2e-62 AT5G62200 225 / 1e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10031684 [exp] 190 / 5e-62 AT5G62200 223 / 5e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10019416 [exp] 167 / 2e-53 AT2G41475 179 / 7e-58 Embryo-specific protein 3, (ATS3) (.1) Lus10009020 [exp] 40 / 0.0002 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10043273 [exp] 0 / 1 AT2G41475 107 / 7e-32 Embryo-specific protein 3, (ATS3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [poplar] [flax] PLAT PF01477 [poplar] [flax] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G193500.1 pacid=42791096 polypeptide=Potri.001G193500.1.p locus=Potri.001G193500 ID=Potri.001G193500.1.v4.1 annot-version=v4.1 ATGATCGACGGCAAAGCACTGGTGACTTTTTGGCTGTATTTGGCTGTTGTATTCACACCGCCACAAGCCAAGTCAAAGATTACACAGCCACAGCCCCTCA CTTCCTTCAAGATCAACACGACGCTGCAGAATACTGCAAGCAGCTGTTCTTACACGGTGACAATAAGAACAAGCTGTTCTTCAAGTCGGTATACACGTGA TCGGATCAGCCTTGCATTTGGAGATGCTTATGGGTATCAGGTATATGTTCCGAGACTTGATGATCCACGTTCAAGAACATTTGAGAGTTGCTCAACAGAT ACATTTCACATTGATGGGCCGTGTACATACCAGATCTGCTATGTGTACCTCTACAGAAATGGCTACGATGGCTGGAAACCTGAGTCTATCACCATATCTG GCTATTACACTTCTTCTGTTACATTTTACTACAACACATTCATCCCTAATGCTGTTTGGTATGGCTTTAATCATTGTAATGCTGCTTCTTCTTCCGCTTG A
AA sequence Show only first row Show all	>Potri.001G193500.1 pacid=42791096 polypeptide=Potri.001G193500.1.p locus=Potri.001G193500 ID=Potri.001G193500.1.v4.1 annot-version=v4.1 MIDGKALVTFWLYLAVVFTPPQAKSKITQPQPLTSFKINTTLQNTASSCSYTVTIRTSCSSSRYTRDRISLAFGDAYGYQVYVPRLDDPRSRTFESCSTD TFHIDGPCTYQICYVYLYRNGYDGWKPESITISGYYTSSVTFYYNTFIPNAVWYGFNHCNAASSSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62200			Embryo-specific protein 3, (AT...		Potri.001G193500 [exp]	0	1
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.012G077101 [exp]	10.90	0.7388
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.016G098200 [exp]	15.36	0.7105	Pt-TIP2.8
AT5G40500			unknown protein		Potri.001G344700 [exp]	19.44	0.6477
AT5G14105			unknown protein		Potri.001G328100 [exp]	34.13	0.6960
AT1G34630			unknown protein		Potri.002G096500 [exp]	39.00	0.6490
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	40.00	0.6530
AT1G72660			P-loop containing nucleoside t...		Potri.003G063500 [exp]	42.66	0.6743	Pt-DRG1.2
AT1G43190		PTB3	polypyrimidine tract-binding p...		Potri.005G194700 [exp]	48.00	0.6419
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Potri.014G100700 [exp]	52.09	0.6645
AT4G13720			Inosine triphosphate pyrophosp...		Potri.001G052400 [exp]	55.39	0.6558

Compare expression of checked genes

Potri.001G193500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.