Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51730 314 / 9e-109 Ubiquitin-conjugating enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G199500 [exp] 400 / 8e-143 AT1G51730 294 / 7e-101 Ubiquitin-conjugating enzyme family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006873 [exp] 300 / 2e-103 AT1G51730 328 / 3e-114 Ubiquitin-conjugating enzyme family protein (.1) Lus10037613 [exp] 285 / 3e-97 AT1G51730 313 / 1e-108 Ubiquitin-conjugating enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF05773 [poplar] [flax] RWD RWD domain
Representative CDS sequence Show only first row Show all	>Potri.001G193700.1 pacid=42789777 polypeptide=Potri.001G193700.1.p locus=Potri.001G193700 ID=Potri.001G193700.1.v4.1 annot-version=v4.1 ATGACTGACTATGGACAGGAGCAGGAGATGGAAATTGAAGCATTGGAAGCCATACTCATGGATGAGTTCGAAGAAATTCATTCTAGCGAGAGTGGCTTAA ATACTTCTAATCGTTGCTTCCAAATAATAATTTCTCCACAGGATGATGACACGGATGAGTCTACTGACATTCCAGTTCAGCTAGGTCTAGTTTTCTCCCA CACAGTAAAGTATCCAGATGAACCACCACTTTTGAATGTGAAGAGCATACGAGGTATCCAAGCAGATTATCTTAAAATTTTGAAAGAAAAGCTTGAGCAA GAGTCATTCGAAAATCTTGGTATGGCGATGGTCTACACACTAGTTACATCTGCTAAAGAGTGGCTGTCTGAAAGATATTGTCAAGATGCTATCAATGAGG ACATTGAAAACGAAGAGGCAGCTAAAGATGATGTAATTGTCCCACATGGAGAACCTGTTACTGTCGAGACATTTTTGGCTTGGAGAGAAATATTTGAAGC AGAGTTGGCCCTTGAGCGAGCCAAGCTGATGCCGGAGTCTGCCCTCACAGCCCCAAAGGAGAAGAAGCTTACAGGCAGACTGTGGTATGAAAGTGGAAAA GCGAAAGGTGCAGTAGCAGTCAATGAAGGATCTGATGAGGAAGATGAGGAAGAAATTGATTTTGATGACGACGATTTTGAAGATGATGAAGAAGATATGC TTGAGCACTATCTGGCGGATAAATCTGACTCTTCTCATGCTTCAAGGAGAGCTGCGTAA
AA sequence Show only first row Show all	>Potri.001G193700.1 pacid=42789777 polypeptide=Potri.001G193700.1.p locus=Potri.001G193700 ID=Potri.001G193700.1.v4.1 annot-version=v4.1 MTDYGQEQEMEIEALEAILMDEFEEIHSSESGLNTSNRCFQIIISPQDDDTDESTDIPVQLGLVFSHTVKYPDEPPLLNVKSIRGIQADYLKILKEKLEQ ESFENLGMAMVYTLVTSAKEWLSERYCQDAINEDIENEEAAKDDVIVPHGEPVTVETFLAWREIFEAELALERAKLMPESALTAPKEKKLTGRLWYESGK AKGAVAVNEGSDEEDEEEIDFDDDDFEDDEEDMLEHYLADKSDSSHASRRAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51730			Ubiquitin-conjugating enzyme f...		Potri.001G193700 [exp]	0	1
AT5G51170			unknown protein		Potri.015G111628 [exp]	24.28	0.7722
AT1G67620			Lojap-related protein (.1)		Potri.008G105700 [exp]	33.46	0.7023
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.011G063300 [exp]	40.00	0.7266
AT5G42440			Protein kinase superfamily pro...		Potri.005G195500 [exp]	44.27	0.6360
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	59.39	0.6558	SAD1.1
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Potri.003G123700 [exp]	69.64	0.6919
AT2G45610			alpha/beta-Hydrolases superfam...		Potri.002G150900 [exp]	70.55	0.6332
AT3G54070			Ankyrin repeat family protein ...		Potri.014G058100 [exp]	76.43	0.7156
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051800 [exp]	78.37	0.7022
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.006G279100 [exp]	82.40	0.6487

Compare expression of checked genes

Potri.001G193700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.