Plant FIBer expression Database

Potri.001G193900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51745 360 / 3e-115 Tudor/PWWP/MBT superfamily protein (.1.2)
AT3G21295 355 / 2e-112 Tudor/PWWP/MBT superfamily protein (.1)
AT3G03140 175 / 1e-45 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G045600
[exp]
1168 / 0 AT1G51745 362 / 4e-116 Tudor/PWWP/MBT superfamily protein (.1.2)
Potri.019G048100
[exp]
169 / 1e-43 AT3G03140 364 / 3e-114 Tudor/PWWP/MBT superfamily protein (.1)
Potri.013G081400
[exp]
166 / 1e-42 AT3G03140 202 / 5e-55 Tudor/PWWP/MBT superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037614
[exp]
599 / 0 AT3G21295 370 / 3e-119 Tudor/PWWP/MBT superfamily protein (.1)
Lus10006874
[exp]
597 / 0 AT1G51745 338 / 1e-106 Tudor/PWWP/MBT superfamily protein (.1.2)
Lus10004108
[exp]
175 / 6e-46 AT3G03140 311 / 3e-95 Tudor/PWWP/MBT superfamily protein (.1)
Lus10013363
[exp]
175 / 6e-46 AT3G03140 322 / 1e-99 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0049 Tudor PF00855 PWWP PWWP domain
Representative CDS sequence
>Potri.001G193900.1 pacid=42787870 polypeptide=Potri.001G193900.1.p locus=Potri.001G193900 ID=Potri.001G193900.1.v4.1 annot-version=v4.1
ATGGGCAGTAGCTCTGATAACCTCAACAGTAATAACAACAACAACACCACCAAAGCCATTGATGCGTCTGTGGGTGCTTTAGTTTGGGTCCGCCGTAGAA
ATGGGTCATGGTGGCCGGGTCGGATTGTGGGTCTTGATGAAATTTCCGAAGGTAGTTTGGTCTCGCCAAGATCAGGCACTCCTGTCAAACTTCTCGGACG
CGAGGATGCTAGTGTGGATTGGTATAATCTTGAAAAATCCAAAAGGGTGAAGGCATTTCGATGTGGGGAATATGATGAATGTATTGAAAAGGCAAAGGCT
TCCGCTGCAAATGGTAATAAGAGAGTGGTGAAATATGCTCGGAGGGAAGATGCCATTCTCCATGCCTTAGAGATTGAGAATGCTCGCCTAGGCCAGGATC
AGCTGGACTTCTTCTCTAGAAGTGATAATTTGGGTGAAGAGCATGGTAGTTCAGCCAAAGAATCAAGCATGTCATTTTCTGGAAAAGAAGACGGTGATAT
GACTGATGGGGATAGTGATTCTGAAGATAATTCAGATGCGATTGCTGATTCAGATTCTAGTTTGGATTCTGATTCAGGTTCACATTCAGATTTAGCACCA
GAGTTATCACAGTCTGGTACATCTTCTGAAGATCCAAATCATCTTGGTGCTTGTAAGGTGCAATCTTTGCCAGGAAAGAGAAGAAGAACCCCAAATGATT
CTGAGGATGATGGAACAGAAGGAATTAAGCGTATGAGAGGACTCGAGGATCTTGGAATTGGTGTAGGAGATTCAAGCATTGGGAATTGTATGCCTAATTT
CAGTCCTGTAAATGGTAGCAAAGGTTATAACTCGTTGCTGAAAAGAAAAAGGTCTCAAGTAGCAAATGTTAATGAGCTATTGAAAAGAAAAAATCGTCAC
CGACCACTGACGAAAGTTTTAGAGAGTACGACCATGGTGTGTGTTCCAGTTATTTGTGACCAAATTCCCAGTTCAAGTAGCTCACCACTTCCTGGATTAT
CTGACAGTAAGATTTCTGGATTAGAGTCAAATGAGTCTAGAAAGGACTGTTCTATTGCAATTAATAATAACTCAGACAATACTGGAGTTTCTTGTGAGAA
TGATGGCTCATTAAAGTCTTCTGAGCATGTTTATGATGCTCCCCTCATTAATCACAACTTGAAGAAGGAAAAAGATATTTCTAGCGTATCTGGGCTAACT
GAGAACGATTCTGCAGACAGGTTATTTGATGTACCATTTGTTGGGGAGGAAAAACACTCTACAGGAATTTCTCCTATGTCCTGTTCATCTGGAAGGCAGC
AAATTGGTGGATTGGGGAGGCAATCTAGTCAAAGTAGACAAGCAGAAGCTGTATTGTTTAAAAATGAAGCCTGTAATGAATCTGGTTCCACTAGTCTGGC
AGTCAATTGTGTTTATAATAATATCAGCCAAAGGATAGAGAAAGGTACATCAAAGTGGCAGTCAAAAGGAAAGAGGAATTCAAGACACACAAGTAAAAAT
AAAAATCAAGACTCGAGAAAAGATCTGGACATGGATGATGAACCCAATGTGTTCTTGGCAGGTATGGAGCATTTGGATGAATTCTGTCAGGGTCCTGGTC
AGGAAGTTGATTGCAGCGGAGGTAAATCCCAACCATTTACTGAAGACCATGGGGATGCGGTACGGGACTGGAGCAAGTCTTTTCCTCAGGGGGATCTTAG
TATGAAGGGGTTAATGGTGGAGATGTCTGTGCCTCAAAGGTCACTTCCCTACCGTCAATCACGCTTCACAGTTAATTCCAGATATCAGACATCAGATTTT
TCTGGCAGAAATTTCTCCTCAGGTTCAAAACTATTTAATGTTGACATCAAGGTTCAACAAAACTACCGGCAGCAGCATGTTCCATTGGTTTCCCTAATGA
GTAAATTGAATGGTAAAGCCATTGTTGGTCACCCTTTAACAATTGAGAATTTACAGGATGGCTATTCTGATCTATTGCTTGGTAGCAATGAAGGGGATAC
AGTGCATGTTACTGAAATAGAAACTCCCAAATTGGTTTATGCAGCTATGCGGAATTTAGAAGCTGGTAGGATACCTGCCAGGCATATGACAATGAAACCA
CTATCTTCACCTAGTAAATCACACAAATTAAGGAAATGTGGGCTGTTGTCTAAAAAGATTCGGAAACTATCTTCATTGACTGGAAAAAAAGTAGAAGATA
GGAAACTGGTGGTGGAGAAGTCCAAGGGTCCTGCCGTAACTTGTATCCCCCTCAAATTAGTGTTCAGTAGGATAAACGAGGCAGTGAATGGTTCAGCAAG
GCAAACACACTGTGCCTTTACATCAAGCAACTCGTGA
AA sequence
>Potri.001G193900.1 pacid=42787870 polypeptide=Potri.001G193900.1.p locus=Potri.001G193900 ID=Potri.001G193900.1.v4.1 annot-version=v4.1
MGSSSDNLNSNNNNNTTKAIDASVGALVWVRRRNGSWWPGRIVGLDEISEGSLVSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEYDECIEKAKA
SAANGNKRVVKYARREDAILHALEIENARLGQDQLDFFSRSDNLGEEHGSSAKESSMSFSGKEDGDMTDGDSDSEDNSDAIADSDSSLDSDSGSHSDLAP
ELSQSGTSSEDPNHLGACKVQSLPGKRRRTPNDSEDDGTEGIKRMRGLEDLGIGVGDSSIGNCMPNFSPVNGSKGYNSLLKRKRSQVANVNELLKRKNRH
RPLTKVLESTTMVCVPVICDQIPSSSSSPLPGLSDSKISGLESNESRKDCSIAINNNSDNTGVSCENDGSLKSSEHVYDAPLINHNLKKEKDISSVSGLT
ENDSADRLFDVPFVGEEKHSTGISPMSCSSGRQQIGGLGRQSSQSRQAEAVLFKNEACNESGSTSLAVNCVYNNISQRIEKGTSKWQSKGKRNSRHTSKN
KNQDSRKDLDMDDEPNVFLAGMEHLDEFCQGPGQEVDCSGGKSQPFTEDHGDAVRDWSKSFPQGDLSMKGLMVEMSVPQRSLPYRQSRFTVNSRYQTSDF
SGRNFSSGSKLFNVDIKVQQNYRQQHVPLVSLMSKLNGKAIVGHPLTIENLQDGYSDLLLGSNEGDTVHVTEIETPKLVYAAMRNLEAGRIPARHMTMKP
LSSPSKSHKLRKCGLLSKKIRKLSSLTGKKVEDRKLVVEKSKGPAVTCIPLKLVFSRINEAVNGSARQTHCAFTSSNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51745 Tudor/PWWP/MBT superfamily pro... Potri.001G193900
[exp]
0 1
AT1G73460 Protein kinase superfamily pro... Potri.012G039700
[exp]
2.82 0.8258
AT4G20090 EMB1025 embryo defective 1025, Pentatr... Potri.001G075900
[exp]
4.89 0.8462
AT1G22310 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.... Potri.002G097700
[exp]
13.07 0.7904
Potri.018G126925
[exp]
14.69 0.7525
AT5G17910 unknown protein Potri.019G044500
[exp]
15.68 0.8039
AT2G36240 pentatricopeptide (PPR) repeat... Potri.006G068700
[exp]
16.97 0.7990
AT1G17980 PAPS1 poly(A) polymerase 1 (.1), pol... Potri.015G043200
[exp]
17.23 0.7474
AT1G08060 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS ... Potri.013G006000
[exp]
19.89 0.8032 MOM.2,1
AT5G27240 DNAJ heat shock N-terminal dom... Potri.005G043200
[exp]
20.00 0.7882
AT5G01110 Tetratricopeptide repeat (TPR)... Potri.001G139300
[exp]
22.00 0.7875

Potri.001G193900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.