Plant FIBer expression Database

Potri.001G194250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G194250.1 pacid=42787987 polypeptide=Potri.001G194250.1.p locus=Potri.001G194250 ID=Potri.001G194250.1.v4.1 annot-version=v4.1
ATGAGCCACCGCTACTGGCGGCGCGTGGGTTCACGCGCCGCCGCTGGAAAACCTGAAAAAACAGGGGTGCCTGGAGCGTCTTCCTCCTCTTCCTTTCCCT
GTCGGCGGCCGGTTCTGTGGAGCTGCTTCTCCGTTGCTGTTGGTAGCCGGCCGAGGGAGTGTGGACGGCGCTGCTGGGACTGTGGGGGTTTCTCTCCGAT
TGGCTTTCCCAAGGCCACGGGAGGCAGCGGCTGGAGAGGCTGTCAGCGGACGATGGAGAGAGTGGAACTGGCTGGGAGAGGGGAGAGGAAGATGGGGCTA
CGGTGGAGGCTGATTTGTGAGGGGAGGCTGGAGCAGATGGTCTGTAGGGGGCTGAGAGAGGAGAGGGGCGTTGGGTGTTGGTCAGCGGCTGGGGAAGGGA
AGATGAGAAGGAAAAAGGGCCAGAGGGCAAGGGAGAGTGAGGGGGAAGATCTCTGGAGGGGGGAACCGGTTAAGGATGGCTGCTGGCCAAGGAAAAGGAA
GAGAGATGGCCGGGGAGGAAGAGAAGAAATGCTAAAAATCAGAGGGGAGGGGCAGCGGCGGCTCCTTTCGGTGAGGGAGAAGAGGGAGTTCAACTTTTAG
AA sequence
>Potri.001G194250.1 pacid=42787987 polypeptide=Potri.001G194250.1.p locus=Potri.001G194250 ID=Potri.001G194250.1.v4.1 annot-version=v4.1
MSHRYWRRVGSRAAAGKPEKTGVPGASSSSSFPCRRPVLWSCFSVAVGSRPRECGRRCWDCGGFSPIGFPKATGGSGWRGCQRTMERVELAGRGERKMGL
RWRLICEGRLEQMVCRGLREERGVGCWSAAGEGKMRRKKGQRARESEGEDLWRGEPVKDGCWPRKRKRDGRGGREEMLKIRGEGQRRLLSVREKREFNF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G194250
[exp]
0 1
Potri.001G306932
[exp]
8.48 0.7647
AT2G41905 unknown protein Potri.009G063600
[exp]
9.16 0.6944
Potri.003G203701
[exp]
10.72 0.6750
AT1G68510 AS2 LBD42 LOB domain-containing protein ... Potri.010G125000
[exp]
14.31 0.7293
AT5G66985 unknown protein Potri.007G034700
[exp]
16.73 0.7365
AT4G04870 CLS cardiolipin synthase (.1) Potri.004G018300
[exp]
19.44 0.5294
AT4G05030 Copper transport protein famil... Potri.006G001800
[exp]
20.78 0.6877
AT5G09360 LAC14 laccase 14 (.1) Potri.001G206200
[exp]
24.12 0.7240
AT5G55850 NOI RPM1-interacting protein 4 (RI... Potri.001G368900
[exp]
26.45 0.6555
AT5G05960 Bifunctional inhibitor/lipid-t... Potri.010G196300
[exp]
27.85 0.7177

Potri.001G194250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.