Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73030 340 / 1e-120 CHMP1A, VPS46.2 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1) AT1G17730 332 / 2e-117 CHMP1B, VPS46.1 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, vacuolar protein sorting 46.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158538 [exp] 367 / 3e-131 AT1G73030 340 / 1e-120 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1) Potri.003G045300 [exp] 352 / 1e-125 AT1G73030 335 / 1e-118 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037607 [exp] 343 / 1e-121 AT1G17730 378 / 1e-135 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, vacuolar protein sorting 46.1 (.1) Lus10006868 [exp] 343 / 1e-121 AT1G17730 378 / 1e-135 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, vacuolar protein sorting 46.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF03357 [poplar] [flax] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Potri.001G194400.1 pacid=42791197 polypeptide=Potri.001G194400.1.p locus=Potri.001G194400 ID=Potri.001G194400.1.v4.1 annot-version=v4.1 ATGGGAAACGCGGAGAAGCTTCTGAATCAGATCATGGACTTGAAATTCACATCAAAATCGCTGCAAAGGCAAGCACGGAAGTGCGAGAAGGAAGAGAAAT CGGAGAAATTGAAAGTCAAGAAGGCGATCGAGAAAGGAAACATGGATGGTGCTCGAATCTATGCCGAGAACGCCATTCGTAAGAGAACTGAACAGATGAA TTACTTGAGGCTCGCCTCCAGGCTCGATGCCGTCGTGGCCAGGCTTGATACTCAGGCTAAGATGACTACCATTAACAAGTCTATGGCTTCTATTGTTAAG TCTCTCGAGTCGACTCTCGCTACTGGTAATTTGCAGAAGATGTCAGAGACAATGGATCAGTTTGAGAAGCAGTTTGTGAACATGGAGGTACAGGCAGAGT TCATGGAGAGCGCGATGGCTGGTTCTACCTCGCTGTCCACACCTGAGGGTGAGGTCAACAGCTTGATGCAACAGGTAGCTGATGACTATGGGTTGGAGGT CTCTGTCGGGCTGCCACAGCCTGCTGCACATGCAGTGGCAACCAAGTCGCAGGAGAAGGTGGATGAGGATGATTTGTCAAGGCGGCTTGCAGAGCTTAAG GCCAGAGGATAA
AA sequence Show only first row Show all	>Potri.001G194400.1 pacid=42791197 polypeptide=Potri.001G194400.1.p locus=Potri.001G194400 ID=Potri.001G194400.1.v4.1 annot-version=v4.1 MGNAEKLLNQIMDLKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMASIVK SLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVATKSQEKVDEDDLSRRLAELK ARG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.001G194400 [exp]	0	1
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.006G158538 [exp]	1.00	0.9753
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249400 [exp]	2.82	0.8869	HTA906
AT4G24440			transcription initiation facto...		Potri.005G151700 [exp]	3.74	0.7837
AT5G57950			26S proteasome regulatory subu...		Potri.006G184600 [exp]	4.89	0.8396
AT5G10980			Histone superfamily protein (....		Potri.007G014300 [exp]	5.47	0.8112
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.004G204700 [exp]	6.24	0.7868
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.005G096700 [exp]	7.00	0.8092	Pt-UBQ7.2
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Potri.011G119000 [exp]	7.74	0.8053	ATCOX17.1
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.004G226600 [exp]	9.32	0.7376
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.005G105700 [exp]	9.79	0.7364

Compare expression of checked genes

Potri.001G194400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.