Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21300 130 / 3e-37 RNA methyltransferase family protein (.1) AT2G28450 37 / 0.0006 C3HZnF zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G195300 [exp] 157 / 2e-47 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1) Potri.009G013000 [exp] 40 / 3e-05 AT2G28450 870 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000172 [exp] 144 / 8e-45 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1) Lus10009743 [exp] 144 / 2e-42 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05958 [poplar] [flax] tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G194701.1 pacid=42789020 polypeptide=Potri.001G194701.1.p locus=Potri.001G194701 ID=Potri.001G194701.1.v4.1 annot-version=v4.1 ATGCACATGAAGTTGCTTAAATTTCTGATAAAGCTCAAGGCCCCACGCATTGTTTATGTATCGTGCAATCCCGCCACATGTGCCCGTGACCTAGATTACC TTTGCCATGGTGTGAAAGAGAAAAATATAGAAGGATGTTACAAACTTAAAAGCCTGCAGCCAGTGGACATGTTTCCCCACACCCCGCATATTGAGTGTAT TTGCCTATTAGAGCTTTTCTGA
AA sequence Show only first row Show all	>Potri.001G194701.1 pacid=42789020 polypeptide=Potri.001G194701.1.p locus=Potri.001G194701 ID=Potri.001G194701.1.v4.1 annot-version=v4.1 MHMKLLKFLIKLKAPRIVYVSCNPATCARDLDYLCHGVKEKNIEGCYKLKSLQPVDMFPHTPHIECICLLELF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21300			RNA methyltransferase family p...		Potri.001G194701 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Potri.018G066600 [exp]	6.92	0.7623
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	11.57	0.8425
AT5G23950			Calcium-dependent lipid-bindin...		Potri.012G144600 [exp]	15.42	0.7430
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.005G179600 [exp]	22.78	0.8004
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Potri.008G147200 [exp]	23.23	0.7431
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Potri.004G046300 [exp]	23.32	0.7964
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	25.88	0.7798
AT4G34200		EDA9	embryo sac development arrest ...		Potri.002G122700 [exp]	33.43	0.7303
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.015G060400 [exp]	42.53	0.7375
AT1G21830			unknown protein		Potri.005G177600 [exp]	69.60	0.7268

Compare expression of checked genes

Potri.001G194701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.