Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21300 817 / 0 RNA methyltransferase family protein (.1) AT2G28450 93 / 2e-19 C3HZnF zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G194701 [exp] 155 / 7e-46 AT3G21300 123 / 8e-35 RNA methyltransferase family protein (.1) Potri.009G013000 [exp] 94 / 1e-19 AT2G28450 870 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009743 [exp] 852 / 0 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1) Lus10000172 [exp] 436 / 9e-152 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1) Lus10037411 [exp] 88 / 8e-18 AT2G28450 874 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10041301 [exp] 86 / 3e-17 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05958 [poplar] [flax] tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G195300.1 pacid=42788977 polypeptide=Potri.001G195300.1.p locus=Potri.001G195300 ID=Potri.001G195300.1.v4.1 annot-version=v4.1 ATGGCCATGGCAGCTGCCATTGTAGCCACCATGCCAGCCTTAAAACACCTAATAAGAATAACATTCACTCCCCCATTTCCACGCAAACTCCAAAAATTCC ATTCGCTAGCTTCCCTTTCTCCTAATTTCACTCAGGAGGGTCCACAGCAACAGCGGCTGGAGCAGGAGCAACAAAATCAACTAACAAACAACAACAACAC TAGCAGAAGCAGCAGTTCGACTTCATATTTTCCGAAGAGAGGGCAAACTTTGGAGTTGGTATGCGAGTCTTTAGCTTTCAAAGGGAAGGGGGTGTGCAAG GTAGCAGGGACTGGTTTTGTTGTCATGTGTGACCGTGCTCTCCCTGGTGAAAGGTTTATTGGACGGGTTACTCGCAGAAAGGGATCCTATGCTGAGGTAA CCAAGGTAGAAACAATAACACCTCACTGGGATCTCGTAGATGCCCCTTGTGAGTATGCCCCATATTGTGGTGGTTGTAAAACACAAAACCTGTCTTATGA GTCTCAGCTTAGAGCCAAGGAACAACAAGTTCGTGAGTTAACAATACATGTTGGAAAGTTTTCGGACAAAGTTCCAGAATTTTGTAGCATCATGAAGCCC ATTGTTCCATGTGTTATTCAATTCCATTATAGAAACAAGATGGAGTTTTCTTTTGGTTCTAAAAAATGGTTACCTAAAGAGTTGTTGGGAGAGAAACAAG TTGGTAACGAGAAATATGCATTGGGACTGCATGCTCCTGGATTTTTTGACAAGGTTCTAAATGTTGACAAATGCCTGTTACAAAGTGAGCCTGCCAACAT GGTTCTAGCAGCCATCCAAGATTGCTGGAGAGATTCACAATTTGGTCTCACTCCATATGATGTTCACTCTCACACTGGATTTCTTAAACATCTAATGCTA AGAACTGGAAGGAATGCAGAGACTGGTTTGCCTGAGCTTATGGTTAATTTTGTGACCTCGTCGTACAAGCCAGAGCTGCTGAAGCCCTTAGTTGAAAAGA TTTCAGCTATTCCAGAAGTGGTAAGCATTATGAATAATGTGAATACTTCTGTTGGCAACACGTCTGTTGGTGAGGAGGAATACACTTTGTATGGCAAATC TACCATCACAGAGATCTTAAGAGGACTGACCTTCCAAATTTCAGCCAATTCTTTTTTCCAGACAAATACTCATCAGGCAGAGGTTCTGTATAAACTTATT GAAGATTGTGCTGGTCTCAGAGGGGATGGCTCACAAATTGTCCTTGATCTATTTTGTGGAACTGGCACTATTGGTTTGACACTTGCCAGAAGGGCTAAAC ATGTATATGGCTATGAAGTAGTTCCTCAAGCAATCTCAGATGCTCATCGAAATGCCAAGCTGAACAGGATCAGCAATGCTACATTTGTCCAGGGGGATCT AAACAAAATTGATGAAAGTTTTGGCAACAATTTTCCGAAGCCTGACATTGTCATTTCAGATCCAAACCGTCCTGGTATGCACATGAAGTTGCTTAAATTT CTGATAAAGCTCAAGGCCCCACGCATTGTTTATGTATCGTGCAATCCCGCCACATGTGCCCGTGACCTAGATTACCTTTGCCATGGTGTGAAAGAGAAAA ATATAGAAGGATGTTACAAACTTAAAAGCCTGCAGCCAGTGGACATGTTTCCCCACACCCCGCATATTGAGTGTATTTGCCTATTAGAGCTTTTCTGA
AA sequence Show only first row Show all	>Potri.001G195300.1 pacid=42788977 polypeptide=Potri.001G195300.1.p locus=Potri.001G195300 ID=Potri.001G195300.1.v4.1 annot-version=v4.1 MAMAAAIVATMPALKHLIRITFTPPFPRKLQKFHSLASLSPNFTQEGPQQQRLEQEQQNQLTNNNNTSRSSSSTSYFPKRGQTLELVCESLAFKGKGVCK VAGTGFVVMCDRALPGERFIGRVTRRKGSYAEVTKVETITPHWDLVDAPCEYAPYCGGCKTQNLSYESQLRAKEQQVRELTIHVGKFSDKVPEFCSIMKP IVPCVIQFHYRNKMEFSFGSKKWLPKELLGEKQVGNEKYALGLHAPGFFDKVLNVDKCLLQSEPANMVLAAIQDCWRDSQFGLTPYDVHSHTGFLKHLML RTGRNAETGLPELMVNFVTSSYKPELLKPLVEKISAIPEVVSIMNNVNTSVGNTSVGEEEYTLYGKSTITEILRGLTFQISANSFFQTNTHQAEVLYKLI EDCAGLRGDGSQIVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAISDAHRNAKLNRISNATFVQGDLNKIDESFGNNFPKPDIVISDPNRPGMHMKLLKF LIKLKAPRIVYVSCNPATCARDLDYLCHGVKEKNIEGCYKLKSLQPVDMFPHTPHIECICLLELF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	0	1
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.014G171800 [exp]	6.00	0.8907
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Potri.017G015800 [exp]	7.74	0.8786
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Potri.019G057200 [exp]	9.74	0.9044
AT3G21300			RNA methyltransferase family p...		Potri.001G194701 [exp]	11.57	0.8425
AT3G01750			Ankyrin repeat family protein ...		Potri.008G179100 [exp]	15.23	0.8636
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Potri.010G142100 [exp]	16.34	0.8263
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Potri.004G046300 [exp]	16.85	0.8528
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.012G145600 [exp]	17.32	0.8688
AT5G67385			Phototropic-responsive NPH3 fa...		Potri.007G053200 [exp]	24.04	0.8685
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.007G100200 [exp]	24.97	0.8739

Compare expression of checked genes

Potri.001G195300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.