Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 65 / 7e-12 unknown protein AT3G11290 62 / 6e-11 unknown protein AT2G19220 50 / 4e-07 unknown protein AT3G11310 46 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137800 [exp] 360 / 7e-126 AT5G05800 110 / 3e-27 unknown protein Potri.019G061000 [exp] 314 / 6e-108 AT5G05800 89 / 9e-20 unknown protein Potri.005G153700 [exp] 305 / 3e-104 AT5G05800 94 / 2e-21 unknown protein Potri.010G132850 [exp] 305 / 3e-104 AT5G05800 100 / 1e-23 unknown protein Potri.003G006700 [exp] 305 / 5e-104 AT5G05800 99 / 3e-23 unknown protein Potri.014G026000 [exp] 304 / 8e-104 AT5G05800 100 / 2e-23 unknown protein Potri.001G402200 [exp] 301 / 8e-103 AT5G05800 100 / 1e-23 unknown protein Potri.004G230401 [exp] 301 / 5e-102 AT5G05800 100 / 4e-23 unknown protein Potri.003G192350 [exp] 301 / 6e-102 AT5G05800 100 / 4e-23 unknown protein
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G195601.1 pacid=42792068 polypeptide=Potri.001G195601.1.p locus=Potri.001G195601 ID=Potri.001G195601.1.v4.1 annot-version=v4.1 ATGGAAGGTCCTGAAAGTATGGATAAAGCAGCATGGACTAAAGAAATATTGCATGTCTTTTGTGACCTTTGCATCAAGGCTATCGACATGGGAATGAAAC CAAATACTCATTTCGACAAAGCTGAACAAACTGATCATGCATTCACCAAGGCACAATTGAAGAACAAATGGGATGGCAGCAAAAAGGATTGGAGGATATG GAATAAGCTCATTTCTGAAACTGGTGTGGGTTGGAGTACTAAATTAGGAACAATTTCTGCTAGAGCAAAAAAGTTTAGGCACTTCGGTATCGAACCGTCG TTGTGTATGAAGTACGACAGAATGTTCACAAACATTATTGCTACCAGCAATTATGCGTGGGCACCATCGTCTGGAGTCTTACCTGATCATGATGTCGGTG TTGATGGCAATCAACATGCCAAGGTTGATCAGCCCGATTTGGAAGAAGAAAGCGGTGATTCTGAAGAGGACGGAATTTCAAATTTTACCGGTGATGTTTG CAACATGGTTAGAGGGGTTAATATGTCTACCAGAAGCAACAACCGCAGTAGTGGGAAGAGGAAAGAAAGAGAACATTTTAAGGTTCAAGCTGGGGAAAAA AAAGGAATTCCAGCATATCAGGAAGGGTGTAATATTCCTGAGGTTATGACAGAGCTTCACTCAATTGAAGGAGTTCATATCGGTGATGATTTTCATGGGT TTGCTACTGAGTTTTTAGGTTTGAGAAGGAATAGAGAAATGTGGTCAACTATGGGTAATATTGAAAACAAGATGAAATGA
AA sequence Show only first row Show all	>Potri.001G195601.1 pacid=42792068 polypeptide=Potri.001G195601.1.p locus=Potri.001G195601 ID=Potri.001G195601.1.v4.1 annot-version=v4.1 MEGPESMDKAAWTKEILHVFCDLCIKAIDMGMKPNTHFDKAEQTDHAFTKAQLKNKWDGSKKDWRIWNKLISETGVGWSTKLGTISARAKKFRHFGIEPS LCMKYDRMFTNIIATSNYAWAPSSGVLPDHDVGVDGNQHAKVDQPDLEEESGDSEEDGISNFTGDVCNMVRGVNMSTRSNNRSSGKRKEREHFKVQAGEK KGIPAYQEGCNIPEVMTELHSIEGVHIGDDFHGFATEFLGLRRNREMWSTMGNIENKMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05800			unknown protein		Potri.001G195601 [exp]	0	1
AT3G11310			unknown protein		Potri.001G182200 [exp]	2.00	0.9600
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Potri.003G087900 [exp]	4.89	0.9385
					Potri.017G046700 [exp]	5.91	0.9213
					Potri.002G214475 [exp]	7.93	0.9074
AT1G15780			unknown protein		Potri.003G026510 [exp]	8.48	0.9030
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	9.79	0.8748
					Potri.017G046400 [exp]	9.94	0.8460
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Potri.006G165200 [exp]	11.48	0.7968
AT5G05800			unknown protein		Potri.001G238000 [exp]	14.14	0.9067
AT2G30150			UDP-Glycosyltransferase superf...		Potri.009G077400 [exp]	14.38	0.8293

Compare expression of checked genes

Potri.001G195601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.