Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10900 374 / 7e-120 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G63870 352 / 4e-114 PP7, ATPP7 serine/threonine phosphatase 7 (.1.2.3) AT1G48120 284 / 2e-81 hydrolases;protein serine/threonine phosphatases (.1) AT2G42810 181 / 3e-49 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT2G29400 135 / 1e-34 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT2G39840 131 / 2e-33 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT1G03445 133 / 8e-32 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT3G05580 125 / 1e-31 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G27840 125 / 2e-31 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT4G03080 131 / 3e-31 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456600 [exp] 381 / 9e-125 AT5G63870 605 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Potri.011G145300 [exp] 369 / 4e-120 AT5G63870 580 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Potri.014G141800 [exp] 173 / 6e-46 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.014G135800 [exp] 136 / 9e-33 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.001G245700 [exp] 129 / 1e-32 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.002G213300 [exp] 134 / 4e-32 AT4G03080 1439 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.019G018000 [exp] 127 / 5e-32 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 127 / 6e-32 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.013G045900 [exp] 126 / 2e-31 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020898 [exp] 369 / 2e-119 AT5G63870 608 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Lus10033478 [exp] 359 / 5e-116 AT5G63870 601 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Lus10031381 [exp] 170 / 5e-46 AT2G42810 699 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Lus10016489 [exp] 132 / 7e-34 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004989 [exp] 130 / 5e-33 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10040742 [exp] 128 / 3e-32 AT5G59160 466 / 1e-166 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10031489 [exp] 128 / 4e-32 AT3G05580 565 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10040259 [exp] 125 / 2e-31 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 125 / 3e-31 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 124 / 5e-31 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.001G196600.1 pacid=42789212 polypeptide=Potri.001G196600.1.p locus=Potri.001G196600 ID=Potri.001G196600.1.v4.1 annot-version=v4.1 ATGGACCTTGAGTTGAAGAGAGTTCAAGAAGCAAGGCGTAATGATTGTAAAAAGGTTATGAACTATATAAATTCGATGGATTTTACTAGTTTGGATGATA AAGAAATTCGTACAATGGTGATGATACGAGAATTAGGTAATGGGATTGTTAATCGTCAAACGAAACTGGCTACTGAAGATGATGTGTCTCGGGTCTTGAA GATCAGCATTGAGACTATGGTAGGGGAATGCAGAAAAATAGTTGATCAAATTAGTCTTACATCCTTTCACGACTTCAATGCACAAGAGAGGAAATCATTG ACAAAGATTTCAGAAATTGCACGCTGGATTATTGCTAAACAAGGTTCTACAATGAATCGGCATAGGGATATTAATCAAGTGCTAGAAGGGGAAGATAAGC TAGCTGTTGGAATGATTGGATATGGTGAGATGGATATTGAATTTGGAGATAAAGAAGAGCTGGCCATTGGTGAACTCAGTGTCCTGCAAGACAACCACAG TGTTATGCAAGATAAAAATGAGGTGGCAGTTGGCCAGCACAATGACTTGCAGGATAGAGAGATCGCTATGCTAGATAAAGAAGGGCTGGTCATGGGTGAT CAGGGTGACCTGCATGATAGACAAAGTCTTCTAGTAGATATAGAGGGTGTCGTCATTGGTGAGCACAGTGACCTGCTGAACAGACAAATTGTTATGGGAG ATAAAGATGGTTTGGCTGTCGGTGAGCACAATGACCTTCAAGACAGGCTGATTTCCATGGGAGATGAGGAGGGTATGGGTGTTCGCAACCTGCAGGACAT AGAGATTATTATGGAAGATAAAGAGGGGCTGGTTGTTGGTGAGCACAGTGATATGCAAGATAAACATGTTGACATGGAACTGGGAGAACCAACTCGAGAG CCAATTTCCTGGCCTCTGAATGGGGAAATAACTCTAGATTGGATTTTAAATTTGATGGAAACCTTTAAATGGGCTTCGTGGAACAAGTCACTGTCAGAGT TTGCATCTATCATGCCACTCTTTGTGGTGGAGGAATTGATAACTAAAGCTTCATACATCCTATGCCAAGAACCTAATTGTGTAAAGATCCAATGCGACAA TAATACCGAAGTGGTTGTAGTTGGTGATCTACGTGGGCAATATCTTGACCTGCTTAATATTTGGGAAAGTGTTGGTTTACCCTCTGACAAGCAGCTTTTT GTTTTTAATGGAAACTACATCGATAGGGGCAAATCAAGCTTGGAATTGTTTCTTGTTTTGTTGGCTTGGAAGGCCTTCTTGCCTCATAGGATTTATTTGC TGCGTGGAAATCATGAGTCAAGTGATATCTCCGAAATATGTGGTTTTCTGAAGGAGGTAAATCGCAAATTTCCTGAACATGGCCAAACTGTCTACCGAAA ATGTTTGAAAGTTTTTGCAGAACTTCCTCTGGCCTCAATAATAGCAGATTGTGTTTATACAACCCATGGAGGGCTTTTCCGGAGTGAAGGAATTACTTCA TCACAAAGTTTTGGAGAAAATGAATTGCAGAACGGCAATGGAAACAAAAGTGGAAATAAAAAACAAAAGATGACTACCACTTTATCTTTGGGTTCTTTGG ATGAGTTACATCAAGTAAGCAGATTCGTTCATGATCTGTCAGCAAAAGATGCTATTTTGACTGATGTTTTATGGTCAGATCCAACAACAGAATCTGGTCT TACGGAAAACAATAGAGGTGATGCAGGTCTTCTTTGGGGTCCTGATTGCACAGAGGCCTTTTTAGAACATTCCAAGTTAAAGGTGATTATAAGGTCACAT GAAGGCCCTGACTCGATAGCTTGTCAGAAAGGTTTCAAAAATATGTTGGAGGGCTACAGCACAGATCATGAAGTAGAATCAGGGAAGCTATATACCCTAT TCAGTGCCCCTGATTACCCACAGCATACAAGCAAAGATTATAAAAGTAAAGGAGCATATGCTATTCTGAAGCCTCCTAATTTCGATACCCCTGAGTTTGT GTCATTTGAAGCCAGAAAAAGACACGAGGCATCAATCAAAGCCATCTCTTTTGGTCAACAATCAGATTCTGCTGCCACAAGCTCTGGAACTGACATTGGG GCTTCAGGGATCTCTACTTCCCCATCTTGGATTATTTCGTTGGCAGATGATGTGGGCACACCAGCACAGATTTCAGAGGCTTCCAAGGTGGAAAGATCAC CTCTCCCTTCAGACTTACAGGAACCACACAAGTCTAATTACGAGTACCTTTTAAATCTCATTGGTAGCTTGAAGAAAGAAATTAAAAAGAAGGATGATGA ACTTGATGATTATAAGCGCAAATACATTTTGCAAAGCCCTTCTCCTGCCAAGTGA
AA sequence Show only first row Show all	>Potri.001G196600.1 pacid=42789212 polypeptide=Potri.001G196600.1.p locus=Potri.001G196600 ID=Potri.001G196600.1.v4.1 annot-version=v4.1 MDLELKRVQEARRNDCKKVMNYINSMDFTSLDDKEIRTMVMIRELGNGIVNRQTKLATEDDVSRVLKISIETMVGECRKIVDQISLTSFHDFNAQERKSL TKISEIARWIIAKQGSTMNRHRDINQVLEGEDKLAVGMIGYGEMDIEFGDKEELAIGELSVLQDNHSVMQDKNEVAVGQHNDLQDREIAMLDKEGLVMGD QGDLHDRQSLLVDIEGVVIGEHSDLLNRQIVMGDKDGLAVGEHNDLQDRLISMGDEEGMGVRNLQDIEIIMEDKEGLVVGEHSDMQDKHVDMELGEPTRE PISWPLNGEITLDWILNLMETFKWASWNKSLSEFASIMPLFVVEELITKASYILCQEPNCVKIQCDNNTEVVVVGDLRGQYLDLLNIWESVGLPSDKQLF VFNGNYIDRGKSSLELFLVLLAWKAFLPHRIYLLRGNHESSDISEICGFLKEVNRKFPEHGQTVYRKCLKVFAELPLASIIADCVYTTHGGLFRSEGITS SQSFGENELQNGNGNKSGNKKQKMTTTLSLGSLDELHQVSRFVHDLSAKDAILTDVLWSDPTTESGLTENNRGDAGLLWGPDCTEAFLEHSKLKVIIRSH EGPDSIACQKGFKNMLEGYSTDHEVESGKLYTLFSAPDYPQHTSKDYKSKGAYAILKPPNFDTPEFVSFEARKRHEASIKAISFGQQSDSAATSSGTDIG ASGISTSPSWIISLADDVGTPAQISEASKVERSPLPSDLQEPHKSNYEYLLNLIGSLKKEIKKKDDELDDYKRKYILQSPSPAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Potri.001G276900 [exp]	3.46	0.8231
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	5.29	0.8245
AT5G09390			CD2-binding protein-related (....		Potri.003G023700 [exp]	5.47	0.8239
AT1G04790			RING/U-box superfamily protein...		Potri.003G176500 [exp]	6.00	0.7894
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	6.48	0.8177
AT4G14790		ATSUV3, EDA15	embryo sac development arrest ...		Potri.010G084100 [exp]	7.34	0.8048
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.013G033800 [exp]	8.06	0.7953
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	9.59	0.7828
AT5G35910			Polynucleotidyl transferase, r...		Potri.013G062800 [exp]	10.72	0.8195
AT1G43860			sequence-specific DNA binding ...		Potri.005G186700 [exp]	10.81	0.7607

Compare expression of checked genes

Potri.001G196600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.