Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72670 84 / 9e-19 IQD8 IQ-domain 8 (.1) AT2G26180 68 / 3e-13 IQD6 IQ-domain 6 (.1) AT1G17480 46 / 8e-06 IQD7 IQ-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G042700 [exp] 206 / 9e-65 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.006G226600 [exp] 91 / 4e-21 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.009G015800 [exp] 44 / 6e-05 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.001G215200 [exp] 43 / 7e-05 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.016G086300 [exp] 42 / 0.0002 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.004G053000 [exp] 41 / 0.0003 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.006G131100 [exp] 40 / 0.0006 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.001G375700 [exp] 40 / 0.001 AT3G15050 245 / 1e-80 IQ-domain 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013522 [exp] 63 / 2e-11 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10025425 [exp] 47 / 4e-06 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10015300 [exp] 44 / 6e-05 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10015067 [exp] 41 / 0.0003 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G197101.1 pacid=42792834 polypeptide=Potri.001G197101.1.p locus=Potri.001G197101 ID=Potri.001G197101.1.v4.1 annot-version=v4.1 ATGCATGCAAGCTCTTGTCCGGGGTCATACTCGAGTAAGGGCTCAGACTTTACAAATGAGGAAAGAGGAGCCATTAAGAGAGAGAGAGCAATTGCATATT CCCTCTCTCGACAGAAATCAAGATCTTGCGCAAGCCCATATTGTAGAAGGACAAGCAAGTCAGCATTGTCTCTTAAGAATCAGTCACAGAATAACAGCAG CCCTGGATGGAGCGGTCTGGACCATTGGATGACAACCAAGCCATGGGAAAAAAGACTGGTGGAAGAATTTCATACCAACTCATCAGAGATTCAACTTTCC AGGAAAAGTGAAGATAATATTGCCAGCTTCTATTTTTCTAAACACGACTCCGTAAAATTGAGAAAAAACATTGTTGCAAGCAAAATTCTTGCTAAATCTC CAGCTGTCAATCACGTTACTTGCTCGTCTTCAGCACCGAGTTCTGAATGCCAATACAATGAGAGCTCGGTATCAACTTCATCTACATCTCCCTCTCCAAT ACCATTTTCAATGGACATGTTAGTGGCAGACAGAGTACAAGGGAGATATAGCCAAAAAACTGCCTACATGAATCTGACTAAGTCAAATAAGCTCCAGGCC AAAAAACAGCAGGTATTCTTCTCAAAATATTCACAGGCAGATAATAGAGGATAA
AA sequence Show only first row Show all	>Potri.001G197101.1 pacid=42792834 polypeptide=Potri.001G197101.1.p locus=Potri.001G197101 ID=Potri.001G197101.1.v4.1 annot-version=v4.1 MHASSCPGSYSSKGSDFTNEERGAIKRERAIAYSLSRQKSRSCASPYCRRTSKSALSLKNQSQNNSSPGWSGLDHWMTTKPWEKRLVEEFHTNSSEIQLS RKSEDNIASFYFSKHDSVKLRKNIVASKILAKSPAVNHVTCSSSAPSSECQYNESSVSTSSTSPSPIPFSMDMLVADRVQGRYSQKTAYMNLTKSNKLQA KKQQVFFSKYSQADNRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.001G197101 [exp]	0	1
					Potri.015G068850 [exp]	41.71	0.5795
					Potri.005G022200 [exp]	66.62	0.4754
AT3G22910			ATPase E1-E2 type family prote...		Potri.016G009101 [exp]	84.89	0.5477
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Potri.005G060900 [exp]	91.67	0.5418
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Potri.010G123801 [exp]	147.00	0.4853
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	162.17	0.4593
					Potri.015G129650 [exp]	162.94	0.4969
					Potri.004G188950 [exp]	208.08	0.4839
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.004G133100 [exp]	209.43	0.4839
					Potri.014G114801 [exp]	210.78	0.4839

Compare expression of checked genes

Potri.001G197101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.