Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08520 286 / 3e-100 SNARE-like superfamily protein (.1) AT3G09800 286 / 3e-100 SNARE-like superfamily protein (.1) AT1G60970 283 / 6e-99 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G043200 [exp] 351 / 6e-126 AT1G60970 288 / 4e-101 SNARE-like superfamily protein (.1) Potri.001G352900 [exp] 257 / 1e-88 AT1G60970 278 / 6e-97 SNARE-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037624 [exp] 325 / 2e-115 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1) Lus10006883 [exp] 325 / 2e-115 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1) Lus10025383 [exp] 242 / 1e-82 AT1G60970 235 / 6e-80 SNARE-like superfamily protein (.1) Lus10015263 [exp] 56 / 4e-11 AT1G60970 55 / 4e-11 SNARE-like superfamily protein (.1) Lus10012924 [exp] 40 / 0.0002 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [poplar] [flax] PF PF01217 [poplar] [flax] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Potri.001G197200.1 pacid=42790971 polypeptide=Potri.001G197200.1.p locus=Potri.001G197200 ID=Potri.001G197200.1.v4.1 annot-version=v4.1 ATGGATTCCTGCCCCGTGGTGAAAAACATTCTTCTGCTAGACTCTGAAGGGAAGCGAGTTGCGGTCAAATACTATTCAGATGACTGGCCGACCAATAATG CAAAGTTAGCTTTTGAAAAATTGCTTTTTGCAAAGACTATGAAATCAAATGCCCGCACAGAAGCGGAGATTACAATGTTTGACAGTAACATTGTCATCTA CAAATGTGTCCAGGACCTCCATTTTTATGTGACTGGAGGTGAGGATGAAAATGAACTCATTTTAGCTGCTGTTCTTCAGGGTTTCTTTGATTCAGTCTCT CTTCTCTTGAGGAGCAATGTCGACAAAAGGGAGGCACTTGAAAACTTAGATCTCATTTTCTTATGCCTTGATGAGATTGTTGAAAGAGGCATGATCCTCG AAACAGATGCCAATGTTATTGCTGGAAAGGTGGCTGTAAATAGCATGGATCCTAGTGCACCTCTATCCGAGCAGACAATAGGTCAAGCATTGGCCACAGC TCGTGAACACTTGACGAGAACCCTTTTTCAGTAG
AA sequence Show only first row Show all	>Potri.001G197200.1 pacid=42790971 polypeptide=Potri.001G197200.1.p locus=Potri.001G197200 ID=Potri.001G197200.1.v4.1 annot-version=v4.1 MDSCPVVKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKLLFAKTMKSNARTEAEITMFDSNIVIYKCVQDLHFYVTGGEDENELILAAVLQGFFDSVS LLLRSNVDKREALENLDLIFLCLDEIVERGMILETDANVIAGKVAVNSMDPSAPLSEQTIGQALATAREHLTRTLFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	0	1
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	1.41	0.9633
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	1.73	0.9638
AT5G59410			Rab5-interacting family protei...		Potri.009G032100 [exp]	2.00	0.9534
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.009G031200 [exp]	2.44	0.9584
AT4G35335			Nucleotide-sugar transporter f...		Potri.016G113200 [exp]	3.00	0.9427
AT3G49720			unknown protein		Potri.009G082400 [exp]	3.74	0.9438
AT4G17486			PPPDE putative thiol peptidase...		Potri.006G154400 [exp]	4.24	0.9461
AT4G29340		PRF4	profilin 4 (.1)		Potri.006G235200 [exp]	4.47	0.9479	Pt-PRO1.4
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	5.47	0.9425
AT4G00560			NAD(P)-binding Rossmann-fold s...		Potri.014G079700 [exp]	5.65	0.9436

Compare expression of checked genes

Potri.001G197200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.