Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBP6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21280 727 / 0 UBP7 ubiquitin-specific protease 7 (.1) AT1G51710 713 / 0 ATUBP6, UBP6 ubiquitin-specific protease 6 (.1.2) AT4G17895 59 / 4e-09 UBP20 ubiquitin-specific protease 20 (.1) AT5G57990 54 / 1e-07 UBP23 ubiquitin-specific protease 23 (.1) AT4G10570 53 / 4e-07 UBP9 ubiquitin-specific protease 9 (.1) AT5G65450 53 / 4e-07 UBP17 ubiquitin-specific protease 17 (.1) AT4G10590 53 / 5e-07 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 51 / 1e-06 UBP11 ubiquitin-specific protease 11 (.1) AT3G49600 50 / 2e-06 SUP32, ATUBP26, UBP26 ubiquitin-specific protease 26 (.1) AT4G39910 50 / 2e-06 ATUBP3 ubiquitin-specific protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G033700 [exp] 841 / 0 AT3G21280 716 / 0.0 ubiquitin-specific protease 7 (.1) Potri.006G185200 [exp] 63 / 3e-10 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.005G179500 [exp] 61 / 1e-09 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.018G107500 [exp] 54 / 2e-07 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.002G081600 [exp] 51 / 2e-06 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1) Potri.007G093600 [exp] 50 / 2e-06 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.003G202800 [exp] 50 / 3e-06 AT4G30890 577 / 0.0 ubiquitin-specific protease 24 (.1.2.3) Potri.005G156900 [exp] 50 / 3e-06 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.006G201100 [exp] 50 / 3e-06 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006870 [exp] 736 / 0 AT1G51710 691 / 0.0 ubiquitin-specific protease 6 (.1.2) Lus10037610 [exp] 550 / 0 AT1G51710 522 / 0.0 ubiquitin-specific protease 6 (.1.2) Lus10032623 [exp] 84 / 9e-17 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 80 / 1e-15 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 71 / 1e-12 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10027289 [exp] 54 / 2e-07 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 54 / 4e-07 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10024043 [exp] 52 / 7e-07 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10041705 [exp] 52 / 7e-07 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10029686 [exp] 52 / 1e-06 AT3G49600 1255 / 0.0 ubiquitin-specific protease 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G197400.2 pacid=42793204 polypeptide=Potri.001G197400.2.p locus=Potri.001G197400 ID=Potri.001G197400.2.v4.1 annot-version=v4.1 ATGTTGACAGTGAGTGTAAAATGGCAAAAGGAGCTGTTCCCAAAAGTGGAAATTGACACTAGCCAGCCCCCTTATGTTTTCAAATGTCAGTTGCATGGTT TGACTGGAGTCCCCCCCGAGAGGCAGAAGATTATGGTTAAGGGTGGTTTGCTGAAGGATGATGCCAATTGGGCAACCTTAGGAGTGAAGGAGGGTCAAAA ATTGATGATGATGGGGACTGCAGATGAGATTGTGAAGACCCCAGAGAAAGGCCCTGTTTTTATGGAAGATCTTCCAGAAGAAGAACAAATGGTTGCTGTG GGTCACACTGCTGGCCTCTTTAATCTAGGGAACACTTGCTACATGAACTCAACAGTACAATGCCTGCATTCTGTTCCAGAGTTGAAGTCTGCTTTAGTCA GCTATCCATCTCAAAAAAGCAGTGATTTGGATCATACGTCTCATATGCTGACAGCTGCGACTCGAGAACTATTTAATGAGCTCGATAAAAGTGTAAAGCC TGTGGCACCTATGCAGTTCTGGATGGTATTGCGCAAAAAGTATCCGCAGTTTGGTCAATTGCATAATGGAGTCTACATGCAGCAGGATGCTGAAGAATGT TGGACACAACTTTTATACACCCTTTCACAATCACTTGGATCACCGAGTTTCAGTGAAAATCCAGATACAATCAAGGCACTTTTTGGCATTGAACTTGTAA GCAGGGTGCATTGCCAAGAAAGTGGTGAAGAAAGCTCAGAGACAGAATCAGTTTACTCACTTAAATGCCACATATCACAAGAGGTGAACCATTTGCATGA AGGACTGAAGCATGGTTTGAAGTCTGAATTGGAGAAGGCTTCTCCCTGCTTGGGTCGTAGTGCAATTTACCTGAAAGAGTCCCGTATCAATGCCTTGCCA AGGTACCTAACTGTTCAGTTTGTTCGTTTTTTCTGGAAGAGGGAATCAAATCAGAAGGCCAAGATTTTACGGAAAGTGGATTACCCATTACAACTGGATG TCTACGATTTTTGCTCTGATGATCTTTGCAAAAAATTAGAAGCACCTCGCCAGATTTTAAGAGATGAGGAGGGTAAAAAGGCTGGTTTGAAAGCCAAGGA GAAGACCTCGGGTTCAAAAGACAATGATGTCAAGATGACTGATGTGGAGAGGCCATCAAATGAGAGTGGAGAATCATCAAAGCCTACCTCCAAAGAAGAT AAAAAGTCACATTTAACTGGAATATATGATTTGGTAGCTGTGCTCACCCATAAGGGAAGGAGTGCTGATTCAGGGCATTATGTTGCATGGGTCAAGCAAG AAAGTGGGAAATGGATTGAGTTTGATGATGATAATCCTGTTCCACAACGGGAGGAGGATATAACTAAGCTCTCTGGAGGAGGTGATTGGCATATGGCTTA CATTTGCATGTACAAGGCACGAACTGTCCCGATGTAA
AA sequence Show only first row Show all	>Potri.001G197400.2 pacid=42793204 polypeptide=Potri.001G197400.2.p locus=Potri.001G197400 ID=Potri.001G197400.2.v4.1 annot-version=v4.1 MLTVSVKWQKELFPKVEIDTSQPPYVFKCQLHGLTGVPPERQKIMVKGGLLKDDANWATLGVKEGQKLMMMGTADEIVKTPEKGPVFMEDLPEEEQMVAV GHTAGLFNLGNTCYMNSTVQCLHSVPELKSALVSYPSQKSSDLDHTSHMLTAATRELFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVYMQQDAEEC WTQLLYTLSQSLGSPSFSENPDTIKALFGIELVSRVHCQESGEESSETESVYSLKCHISQEVNHLHEGLKHGLKSELEKASPCLGRSAIYLKESRINALP RYLTVQFVRFFWKRESNQKAKILRKVDYPLQLDVYDFCSDDLCKKLEAPRQILRDEEGKKAGLKAKEKTSGSKDNDVKMTDVERPSNESGESSKPTSKED KKSHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEFDDDNPVPQREEDITKLSGGGDWHMAYICMYKARTVPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.001G197400 [exp]	0	1	UBP6.2
					Potri.001G248704 [exp]	3.87	0.6930
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000166 [exp]	22.91	0.5734
AT5G40100			Disease resistance protein (TI...		Potri.006G283100 [exp]	32.24	0.5890
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Potri.007G018600 [exp]	40.12	0.5410
					Potri.009G094450 [exp]	48.98	0.4734
AT2G26800			Aldolase superfamily protein (...		Potri.006G036800 [exp]	50.00	0.5128
AT5G47840		AMK2	adenosine monophosphate kinase...		Potri.019G078200 [exp]	58.00	0.5077
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078600 [exp]	59.89	0.4863	ALDH6.4
AT3G30841			Cofactor-independent phosphogl...		Potri.004G106200 [exp]	71.61	0.5136
AT3G61700			Plant protein 1589 of unknown ...		Potri.015G019500 [exp]	85.78	0.5026

Compare expression of checked genes

Potri.001G197400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.