Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17500 1902 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1882 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1880 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1875 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1355 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 1350 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1348 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G26130 1327 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G27870 1325 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 960 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G043300 [exp] 2269 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1491 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1362 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1361 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1341 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1283 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 944 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 931 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 696 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006881 [exp] 2076 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 2073 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 2055 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1998 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1353 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1333 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1313 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1229 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1130 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 951 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G197500.1 pacid=42789093 polypeptide=Potri.001G197500.1.p locus=Potri.001G197500 ID=Potri.001G197500.1.v4.1 annot-version=v4.1 ATGACACGGGGAAGGATAAGAGCAAGGCTCCGGCGGAGCCATCTCCACCCATTCTCTTGCTTAAGGCCAAATGCCAACAACAACGAGGGGCCACATCCAT TGTCAGGGCCTGGGTTCTCCAGAATTGTTCATTGCAACCGACCTGATAGGCACCTGAAAAAACCCTTGAAATATTGTTCAAATTATATATCTACCACCAA GTATAATATAGTCACATTCTTGCCCAAGGCTCTGTTTGAGCAGTTCCATCGGGTTGCTAATTTCTACTTCCTAGTGGCCGCAGGTCTTTCACTTACAGCT GTTGCCCCATTCTCTCCTGTGAGCATGATTGCACCATTGGCTTTTGTTGTCGGTATTAGTATGTTAAAAGAAGCTCTAGAAGATTGGCATAGGTTTGCGC AGGATATGAAGGTTAATAGTCGGAAAGCTAGTGTTCATAAAGGGGATGGGGTTTTTGGTTATAAGCCATGGCAGAAGATTCAGGTTGGTGATGTGGTGAA AGTGGAAAAAGACCAGTTTTTCCCAGCAGATTTGCTTCTATTGTCAGCAAGTTATGATGATGGGGTATCCTATGTGGAGACTATGAACTTAGATGGTGAG ACAAACTTGAAGGTTAAGAGATCGTTGGAGGTAACCTTGCCTTTGGAGGATGATGAGGCTTTCAAGAACTTTACAGGAATAATAAAGTGTGAAGATCCAA ACCCCAGTCTTTACACGTTTATTGGTAATTTTGAGTATGAACGACAGGTTTATCCTCTTGATCCTAGTCAGATTCTTCTTAGAGATTCAAAGCTCAGGAA TACAGCTTATGTATATGGAGTTGTGATATTCACTGGTTTTGATAGCAAAGTCATGCAGAACTCAACAAAGTCTCCTTCAAAAAGGAGCAAAATAGAGAAA AAAATGGACAAAATTATATACATCCTTCTCAGCCTTCTTTTACTGATTTCATCCATTAGCTCAATTGGCTTTGCTGTGAAGATAAAGCTTCAAATGCCAG ACTGGTGGTACATGCAACCCAAGAATCCTGATAATGATAGTCTCTATAACCCTGATCAGCCCAGCAAGTCAGGACTAGCTCATCTCGTCACTGCCCTCAT CCTTTATGGGTATTTAATACCCATTTCTCTCTATGTCTCAATTGAGATTGTGAAGGTGTTTCAAGCAAGGTTCATTAACCAAGACATACAGATGTATGAT GAAGAATCCGGCAATACTGCTCAAGCACGAACATCAAACTTAAACGAGGAGTTAGGTCAGGTTGACACGATCCTCTCTGATAAGACTGGCACCTTGACCT GTAATCAGATGGATTTTCTGAAATGTTCGATTGCTGGTACTGCATATGGTGTACGTTCAAGTGAAGTTGAACTTGCTGCAGCAAAACAGATGGCTATGGA TCTTGAGGAGCAGGATACACAAATAACTAATGGTTCGAGGTATAGAAAAAGTGCACATAATTCATGGGAGGATAGCAGAGGAGGTCCAGAAATTGAACTT GAGAGTGTTATTACTTCTAAAGGTGAAAATGATCAGAAGCCAGCAATAAAGGGATTTAGTTTTGAGGACAACAAGCTCATGAATGGAAATTGGTTGAAAG AGCCCAATACAGAGGTCATTTTGCTATTTTTCAGGATACTAGCAATTTGTCAGACAGCTGTTCCTGAGCTGAATGAAGAGACTGGTATGTTTACATATGA AGCAGAGTCACCTGATGAAGCGGCCTTTCTTGCTGCGGCAAGAGAATTTGGTTTTGAATTTTGTAAACGAACTCAATCAAGTGTGTTTATTCGTGAAAAA TATGCACACCCAGGACAATTGATTGAAAGAGAGTTCAAAATTCTCAATTTGTTGGAATTTACAAGCCAAAGGAAGCGAATGTCTGTCATCGTGCGGGATG AGGATGGTCAAATTCTACTCCTGTGCAAAGGTGCTGATAGTATAATATTTGATAGATTATCAAAGAATGGAAGAATGTATGAAACAACCACTGCTAAGCA TTTGAATGACTACGGAGAAGTTGGGTTGCGGACATTGGCACTTGCTTATAAAAAGCTTGATGAGTCCGAGTATTCAGCATGGAACAATGAGTTTGTCAAA GCCAAAACTTCTATTAGTGCTGACAGAGATGCAATGCTTGAGCGAGTTGCAGATATGATGGAAAAGGATCTGATTCTTGTTGGTGCTACTGCAGTGGAAG ACAAATTGCAAAAAGGGGTGCCCCAGTGCATAGACAAACTTGCACAAGCTGGTCTCAAGATTTGGGTTTTGACAGGGGATAAGATGGAAACTGCAATAAA CATAGGATTTTCATGTAGTTTACTCCGTCAGGGCATGAAGCAGATCTTCATAACTGTAATGAACTCAGATGCAGTAGCCCAGGAATCAAAGCAGGCTGTG AAAGAGAACATTTTGATGCAAATCACCAATGCCTCTCAAATGGTCAAGCTGGAAAAGGATCCGCATGCTGCATTTGCATTAATTATTGATGGAAAAACCC TATCCTATGCTCTAGAGGATGATATGAAGCATCAGTTCTTAGCGTTGGCTGTTGTCTGTGCATCTGTCATATGCTGTCGTGTATCTCCCAAGCAGAAGGC ACTAGTAACAAGATTAGTAAAGGAAGGAACTGGAAAAACCACGTTAGCGATAGGTGATGGTGCAAACGATGTTGGGATGATTCAAGAAGCTGACATTGGA GTTGGTATCAGTGGGGTGGAAGGCATGCAGGCTGTGATGGCAAGTGATTTTTCTATTTCCCAGTTTCGTTTTCTTGAAAGACTTTTAGTAGTCCATGGAC ACTGGTGCTACAAGAGAATTGCTCAGATGATTTGCTATTTTTTCTACAAAAATATAGCATTCGGCCTTACCCTTTTCTACTTTGAGGCATTCACAGCCTT TTCTGGGCAATCAGTTTACAATGACTGGTACATGCTATTGTTCAATGTCATTCTTACCTCATTGCCTGTCATATCACTTGGAGTTTTCGAACAAGATGTG TCTTCTGAGGTCTGCTTACAGTTCCCAGCATTGTATCAGCAAGGGCCTAAAAATTTGTTTTTTGATTGGTATAGAATACTTGGGTGGATGGGTAACGGTC TCTATACCTCTCTCGTCATTTTCATCCTCAATATCATGATCTTTTATAACCAAGCATTCCGCGCTGAAGGCCAAACTGCTGATATGGCTGCCATGGGTGC TACTATGTTCTCTTGCATAATCTGTGCTGTAAACTGCCAGATTGCGCTCACAATGAGCCACTTTACATGGATACAACACCTCTTTGTCTGGGGAAGCGTC GCCACTTGGTACTTGTTTCTATTACTTTTTGGGATGTTGCCTCCATATTATTCAGAGGATGCCCACAAAATTTTAGTTGAAGCTCTTGGTCCAGCACCTA TCTACTGGTGTACCACCCTCTTGGTAACAGTCGCATGTATTCTGCCCTACCTTGCTCACATATCATTCCAAAGATGTTTCAATCCGATGGATCATCATAT CATCCAAGAAATCAAGTACTATAAGAAGGATGTTAAGGATCAACACATGTGGAGAAGGGAACGATCCAAGGCAAGACAAGAAACCAAGATTGGGTTCACA GCAAGGGTAGATGCAAAGATCAGACAACTGAAAGGGAAGCTGCAGAAGAAGTCTTCAACCGTGATCTTGCCAAATCGTATGCCTTCCCCGTGTTAA
AA sequence Show only first row Show all	>Potri.001G197500.1 pacid=42789093 polypeptide=Potri.001G197500.1.p locus=Potri.001G197500 ID=Potri.001G197500.1.v4.1 annot-version=v4.1 MTRGRIRARLRRSHLHPFSCLRPNANNNEGPHPLSGPGFSRIVHCNRPDRHLKKPLKYCSNYISTTKYNIVTFLPKALFEQFHRVANFYFLVAAGLSLTA VAPFSPVSMIAPLAFVVGISMLKEALEDWHRFAQDMKVNSRKASVHKGDGVFGYKPWQKIQVGDVVKVEKDQFFPADLLLLSASYDDGVSYVETMNLDGE TNLKVKRSLEVTLPLEDDEAFKNFTGIIKCEDPNPSLYTFIGNFEYERQVYPLDPSQILLRDSKLRNTAYVYGVVIFTGFDSKVMQNSTKSPSKRSKIEK KMDKIIYILLSLLLLISSISSIGFAVKIKLQMPDWWYMQPKNPDNDSLYNPDQPSKSGLAHLVTALILYGYLIPISLYVSIEIVKVFQARFINQDIQMYD EESGNTAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMAMDLEEQDTQITNGSRYRKSAHNSWEDSRGGPEIEL ESVITSKGENDQKPAIKGFSFEDNKLMNGNWLKEPNTEVILLFFRILAICQTAVPELNEETGMFTYEAESPDEAAFLAAAREFGFEFCKRTQSSVFIREK YAHPGQLIEREFKILNLLEFTSQRKRMSVIVRDEDGQILLLCKGADSIIFDRLSKNGRMYETTTAKHLNDYGEVGLRTLALAYKKLDESEYSAWNNEFVK AKTSISADRDAMLERVADMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFSCSLLRQGMKQIFITVMNSDAVAQESKQAV KENILMQITNASQMVKLEKDPHAAFALIIDGKTLSYALEDDMKHQFLALAVVCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIG VGISGVEGMQAVMASDFSISQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTAFSGQSVYNDWYMLLFNVILTSLPVISLGVFEQDV SSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYTSLVIFILNIMIFYNQAFRAEGQTADMAAMGATMFSCIICAVNCQIALTMSHFTWIQHLFVWGSV ATWYLFLLLFGMLPPYYSEDAHKILVEALGPAPIYWCTTLLVTVACILPYLAHISFQRCFNPMDHHIIQEIKYYKKDVKDQHMWRRERSKARQETKIGFT ARVDAKIRQLKGKLQKKSSTVILPNRMPSPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	0	1
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	2.23	0.7542	NTN2.2
AT3G33530			Transducin family protein / WD...		Potri.018G128400 [exp]	6.70	0.7227
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	6.78	0.7449
AT2G45540			WD-40 repeat family protein / ...		Potri.014G072600 [exp]	10.24	0.7334
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.001G358500 [exp]	16.91	0.6556	Pt-ARF6.3
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.001G269700 [exp]	18.97	0.6527	Pt-GR1.2
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.010G159600 [exp]	19.44	0.6343
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.006G105800 [exp]	20.32	0.6915	WAVE4.1
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	20.34	0.6590
AT1G67420			Zn-dependent exopeptidases sup...		Potri.010G060500 [exp]	22.80	0.6209

Compare expression of checked genes

Potri.001G197500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.