Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATTIM23.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17530 155 / 5e-48 ATTIM23-1 translocase of inner mitochondrial membrane 23 (.1) AT1G72750 153 / 3e-47 ATTIM23-2 translocase inner membrane subunit 23-2 (.1) AT3G04800 103 / 7e-28 ATTIM23-3 translocase inner membrane subunit 23-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G044100 [exp] 210 / 8e-70 AT1G17530 179 / 9e-58 translocase of inner mitochondrial membrane 23 (.1) Potri.005G051800 [exp] 122 / 3e-35 AT3G04800 187 / 4e-61 translocase inner membrane subunit 23-3 (.1) Potri.013G039200 [exp] 120 / 1e-34 AT3G04800 190 / 5e-62 translocase inner membrane subunit 23-3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006020 [exp] 172 / 8e-55 AT1G17530 248 / 1e-84 translocase of inner mitochondrial membrane 23 (.1) Lus10008470 [exp] 166 / 2e-52 AT1G17530 244 / 3e-83 translocase of inner mitochondrial membrane 23 (.1) Lus10009183 [exp] 120 / 2e-34 AT1G17530 198 / 4e-65 translocase of inner mitochondrial membrane 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.001G198100.1 pacid=42792389 polypeptide=Potri.001G198100.1.p locus=Potri.001G198100 ID=Potri.001G198100.1.v4.1 annot-version=v4.1 ATGTCTTACTCCGATAATAACTCGGACCCGAATCAACCCAAACCGGGTACCCGTCTCTACAACCCCTATCAGGATCTCCACTTACCCTCCCAGACACTCT ACCATCTCCCCACCTCGCCCGAATATCTCTTTACCGAGGAATCCCTCCACCAACGCCGCTCTTGGGGCGAAAACCTTACCTTCTACACCGGCTCCGCCTA CCTCTCCGCTTCCATTGCTGGCGGCGCCGCCGGATTCTTCTCCGCTTTCCGATCCTTCGAGCCCACCGATACCCTCAAGCTTAAGGTCAACAGGATCCTC AACTCCTCCGGTCATTCAGGTCGGGTCTGGGGTAACCGGGTCGGAGTTGTGGGTTTGATTTACGCCGGGATGGAGAGTGGCATCGTAGCGATCACCGATA GGGACGATGTGTGGAGTAGCGTGGCTGCTGGGCTTGGAACTGGGGCGGTTTGTAGGGCGGCCAGGGGGGTTAGGTCGGCGGCGGTGGCAGGTGCGCTTGG TGGGTTGGCGGCTGGTGCGGTGGTGGCTGGGAAGCAGGCGTTGAAGAGGTATGCAATGATTTGA
AA sequence Show only first row Show all	>Potri.001G198100.1 pacid=42792389 polypeptide=Potri.001G198100.1.p locus=Potri.001G198100 ID=Potri.001G198100.1.v4.1 annot-version=v4.1 MSYSDNNSDPNQPKPGTRLYNPYQDLHLPSQTLYHLPTSPEYLFTEESLHQRRSWGENLTFYTGSAYLSASIAGGAAGFFSAFRSFEPTDTLKLKVNRIL NSSGHSGRVWGNRVGVVGLIYAGMESGIVAITDRDDVWSSVAAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQALKRYAMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	0	1	ATTIM23.2
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.005G232900 [exp]	1.00	0.7828	XBCP3.1
AT1G16210			unknown protein		Potri.009G140200 [exp]	3.00	0.7573
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	4.24	0.7607
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.010G142400 [exp]	4.89	0.7343
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	6.32	0.7268	EMB78.2
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	7.41	0.6921
AT2G17030			F-box family protein with a do...		Potri.009G140000 [exp]	10.39	0.7118
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.008G135980 [exp]	13.22	0.6549
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	13.49	0.6762	RAB11.15
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Potri.003G194400 [exp]	14.49	0.7102

Compare expression of checked genes

Potri.001G198100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.