Plant FIBer expression Database

Potri.001G198600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13940 327 / 7e-108 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029818
[exp]
418 / 4e-143 AT3G13940 327 / 4e-108 DNA binding;DNA-directed RNA polymerases (.1)
Lus10020738
[exp]
404 / 2e-138 AT3G13940 319 / 1e-105 DNA binding;DNA-directed RNA polymerases (.1)
Lus10007389
[exp]
69 / 2e-14 AT3G13940 56 / 8e-11 DNA binding;DNA-directed RNA polymerases (.1)
Lus10027606
[exp]
52 / 5e-08 ND 38 / 6e-04
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0662 Triple_barrel PF06870 RNA_pol_I_A49 A49-like RNA polymerase I associated factor
Representative CDS sequence
>Potri.001G198600.1 pacid=42788596 polypeptide=Potri.001G198600.1.p locus=Potri.001G198600 ID=Potri.001G198600.1.v4.1 annot-version=v4.1
ATGGGGTTGGAGTTGGATTCATCGCATTTACTAGTCTCGGAGACACCACAAACAGCTACCAAGAAATCAAAAAAGAAGAGGAAGAGAGAGAAGGAAAGGG
ATGACGGTGCCGCCGCAGCCCAACTCCAAAATGAACCAACCATCAATGAGCAGCCTCGTCTTGATGTCAAACTCGAACTTGTCAACAACCAGGTTGACAA
AACCCCACCTGTAGTGGGCTATTTCCCGTCTGGATATAATCCCCACAAAACAAATGACATCAACGATGCACAAGAACCAATCCTCCCACTAGCTGCACCA
CCAAGTGTCAAGCTTTATCGGAATGCGCAGAGGGCCAAGGTTGAGAAAAGCTCCGGTGAAAAGAATGAGAAAGGGAGAACTTCTGAGAGGCTAGAGCTGG
TAGTGAGCCCGAATGGATCGAATGTTGAGTTCGTGGGCAATAGCTATAAAGGTGAGGCTATGGCAGCCCAGTTGTGCACTTATGCGCTTGGGGTTCTTGA
TAAGGCGACTCAGACTTTGAAGATTATGCCTATTGCTGGAAATAAGATACTTAGATTGGAACCAAAACTTCGAGGGTCGCTTGCTGCTGACAAGGAACAT
GCAAATTTTGAAAATGGTGAGATTACTGCAGAACAGAGAGCGGCCAGGATAAGGCAGCTTAATGTTCAATATGGACCAAAGAAATCTATAATCCAGGATA
AAAAAATGCAGGCTCTGAGGAAGGGAGATGATCCTCTTTCTCAGAAGGATCTGGGCAGGAAAATTGAAAATGCCCCAATAAACAAGGATGCTCTTGAAAG
TACCAGTGGCCACAGTGCTCGAAATATTCCACCTTATAATTCTTCTGCCATTACCCCCCAGGAGGCTTATCCTTTGGACGGGATTATTCTCACTGGAGAG
TGGGATTTCCTTGAAGATATTTATAAGATTTTGCAAGTAGGAGGAGAAGTAGCAAGCAATGCTTACCCAACTTTTGTTTGCAACAGGATCCAGAAATTGC
GGGAGATTCAGGATGAGGTGGAGAAGAAGAGACTTTCATGTATTTTCTCATACATCACTCATCTTTTAAAGTTTAAAGATCAGCATTCTATGGATGGTGC
AGCCTCTGCTAGGAACCATCAATTTCCGAGCATCATACGGCAGAAATTTTTTGAGATGTTTAAACCTGAAACAAGAAGGCTGTCAGTTGACAAGATTGAT
CTTCTCATTAGTTATGTTTTGGTTCTCACTTTATATGCTGATGATTTCCGGACTTTTCCGGCAGATGTAAGCAATGATCTAAGAATGAATCCTGCTACTG
TGAAATCTCATTATCGCAATCTGGGTTGCAAGATGGAACGTGAGAAGAACAAGTATTTGGTAACGCTTTCTGTCCCTCTCGAGTTTCCGCAACCAAAGAG
GAAGTTTCGGAATCGATAA
AA sequence
>Potri.001G198600.1 pacid=42788596 polypeptide=Potri.001G198600.1.p locus=Potri.001G198600 ID=Potri.001G198600.1.v4.1 annot-version=v4.1
MGLELDSSHLLVSETPQTATKKSKKKRKREKERDDGAAAAQLQNEPTINEQPRLDVKLELVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAAP
PSVKLYRNAQRAKVEKSSGEKNEKGRTSERLELVVSPNGSNVEFVGNSYKGEAMAAQLCTYALGVLDKATQTLKIMPIAGNKILRLEPKLRGSLAADKEH
ANFENGEITAEQRAARIRQLNVQYGPKKSIIQDKKMQALRKGDDPLSQKDLGRKIENAPINKDALESTSGHSARNIPPYNSSAITPQEAYPLDGIILTGE
WDFLEDIYKILQVGGEVASNAYPTFVCNRIQKLREIQDEVEKKRLSCIFSYITHLLKFKDQHSMDGAASARNHQFPSIIRQKFFEMFKPETRRLSVDKID
LLISYVLVLTLYADDFRTFPADVSNDLRMNPATVKSHYRNLGCKMEREKNKYLVTLSVPLEFPQPKRKFRNR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13940 DNA binding;DNA-directed RNA p... Potri.001G198600
[exp]
0 1
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Potri.006G039600
[exp]
1.73 0.9011
AT1G20220 Alba DNA/RNA-binding protein (... Potri.005G194600
[exp]
3.74 0.8316
AT5G67630 P-loop containing nucleoside t... Potri.016G096800
[exp]
3.74 0.8676
AT3G09630 Ribosomal protein L4/L1 family... Potri.006G132450
[exp]
3.87 0.8560
AT4G05400 copper ion binding (.1.2) Potri.011G098000
[exp]
6.32 0.8388
AT4G26780 MGE2, AR192 mitochondrial GrpE 2, Co-chape... Potri.011G089000
[exp]
7.48 0.8235
AT5G02050 Mitochondrial glycoprotein fam... Potri.006G090700
[exp]
7.74 0.8324 Pt-SDH4.3
AT2G42710 Ribosomal protein L1p/L10e fam... Potri.014G143000
[exp]
11.18 0.8356
AT1G14060 GCK domain-containing protein ... Potri.013G109100
[exp]
11.18 0.7908
AT1G64880 Ribosomal protein S5 family pr... Potri.013G076200
[exp]
13.26 0.7995

Potri.001G198600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.